RNA id: TU1725920


Basic Information

Item Value
RNA id TU1725920
length 2010
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G1508969
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 346216 ~ 348477 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGTTCGCTCCTCTCTCGACAGGTCCTGTCCACGGTCGGGACCGATAACGGAGTTGCACGACAGTAATCTCAGACATGTCGACCACTGAGAATGtctccattgtagaataaatAACTCTCCCGAGACTAAACGTGTAAACATTTCATAAATAAATCAGAATTAAATCAATTTAAGCAAACGGTTGACGCCGAAATGTCCATTTCATTCGTGTTTTTCTTTAGACGTGTCCGTGTCTTATAATTTACCCCCTTCTCCTTGGCTATTTTAAACTCAGTTCCCCTCCCTAACATCAAGCAAAATTGAGACCCGAAGATTTTGGAATAGATACGGGTACAAATCgtatacacctactcattcaagggtttttctttaattttgactattttatacattgtagaataatagtgaagacatcaaaactatgaaataacacacatggaatcctgtagttaccaaaaaaaagtgttaaattaaaaatatattttatatttgagattcttcaaagtagccaccctttgccttgatgacagctttgaacactcttggcattctctcaaccagcttcacctggaatgcttttccaacagtcttgaaagtgttcccacacatgctgagcacttgttggctgcttttccttcactctgcgatccaactcatcccaaaccatctcaaattgggTTGAAGCCGGGTGAATGTGGAGGCCAATAGAGTTTGGAATAGAGACAAGGGTACAAATCCATATACGCATTTATTAGCATTTTATAACAAAAATTTACACAAGGTAGAAAATGTGACTATAAAATCCCAATAATGTAGCTGTGTGACTAAAGTAACATGTTATGGAAATGTACAAGATGCATTCACATGGTAAGGTGATACAGGACAAGACTGACCCCCTGACCCCGTGACCCCGTTCACATGGTAAGGTGATACAGGACAAGACTGACCCCCTGACCCCGTTCACATGGTAAGGTGATACAGGACAGGACTGATCCCCTGACCCCGTGACCACGTTCACATGGTAAGGTGATACAGGACAAGACTGACCCCCTGACCCCGTTCACATGGTAAGGTGTGGCCTACAGTCAAACAATAAACGGGGTCAGTCTCTATGGAGTGTAGAAACGGGGTCAGTCTCTATGCAGAGTAGAAACGGGGTCAGTCTCGATGCAGAGTAGAAACGGGGTCAGTCTCTATGCAGAGTAGAAACGGGGTCAGTCTCGATGCAGAGTAGAAACGGGGTCAGTCTCGATGCAgagtaGAAACGGGGTCAGTCTCTATGCAGAGTAGAAACGGGGTCAGTCTCGATGCAGAGTAGAAACGGGGTCAGTCTCGATGCAGAGTAGAAAcggggtcagtctcagtggagagTAGAAACGGGGTCAGTCTTGATGCAGAGTAGAAACAGGGTCAGTCTCGATGCAGAGTAGAAACGGGGTCAGTCTTGATGCTGAGTAGAAACGGGGTCAGTCTCGATGCAGAGTAGAAAcggggtcagtctcagtggagagTAGAAACGGGGTCAGTCTTGATGCAGAGTAGAAACAGGGTCAGTCTCGATGCAGAGTAGAAACGGGGTCAGTCTTGATGCTGAGTAGAAACGGGGTCAGTCTCGATGCAGAGTAGAAACAGGGTCAGTCTCGATGCAGAGTAGAAAcggggtcagtctcagtggagagTAGAAACGGGGTCAGTCTCGATGCAGAGTAGAAACGGGGTCAGTCTCGATGCAGAGTAGAAATGGGGTCAGTCTCTATGCAGAGTAGAAATGGGGTCGGTCTCGATGCAGAGTAGAAACGGGGTCAGCCTATGCAGAGTAGAAACGGGGTCAGTCTCTGGACCAGAGCTTAGCGGTAATATATATTTACAGGTATAAAGCCAGGTGAATGAACTATGATGTACCAGTTCATGTACATCAACAATACAGTTTCCCAAAATGGTCAAAATATCATTCAagtgtgtagagtacagtatgtagtgactataacagactgtagagtacagtatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1725912 lncRNA upstream 763 344045 ~ 345453 (+) True G1508967
TU1725889 lncRNA upstream 51894 294083 ~ 294322 (+) True G1508949
TU1725878 lncRNA upstream 60257 284602 ~ 285959 (+) False G1508941
TU1725879 lncRNA upstream 60257 284602 ~ 285959 (+) True G1508941
TU1725858 lncRNA upstream 74105 271232 ~ 272111 (+) True G1508925
TU1725929 lncRNA downstream 135 348612 ~ 349176 (+) True G1508970
TU1725913 lncRNA downstream 924 349401 ~ 349841 (+) True G1508968
TU1725930 lncRNA downstream 1395 349872 ~ 350200 (+) True G1508971
TU1725936 lncRNA downstream 1744 350221 ~ 351426 (+) False G1508972
TU1725938 lncRNA downstream 1744 350221 ~ 351426 (+) False G1508972
XM_036951427.1 mRNA upstream 256715 76907 ~ 89501 (+) False LOC110528717
XR_005037338.1 mRNA downstream 73803 422280 ~ 426128 (+) False LOC118941071
XR_005037337.1 mRNA downstream 73803 422280 ~ 426130 (+) False LOC118941071
XR_005037336.1 mRNA downstream 73803 422280 ~ 426131 (+) False LOC118941071
XR_005037339.1 mRNA downstream 73803 422280 ~ 426131 (+) False LOC118941071
XR_005037340.1 mRNA downstream 73803 422280 ~ 426131 (+) True LOC118941071
TU1725907 other upstream 11039 334432 ~ 335177 (+) True G1508964
TU1725647 other upstream 266270 76903 ~ 79946 (+) False LOC110528717
TU1725947 other downstream 16450 364927 ~ 367431 (+) False G1508979
TU1726036 other downstream 94326 442803 ~ 444877 (+) False G1509015
TU1726040 other downstream 94326 442803 ~ 444877 (+) False G1509015
TU1726042 other downstream 94326 442803 ~ 444877 (+) False G1509015
TU1726043 other downstream 94326 442803 ~ 444877 (+) False G1509015

Expression Profile