RNA id: TU1725957


Basic Information

Item Value
RNA id TU1725957
length 209
lncRNA type intronic
GC content 0.43
exon number 2
gene id G1508981
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 378338 ~ 379679 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtataacaaggtacagtctcatagccacagtactgcagtataacaaggtacagtctcatagccacagtataacaaggtacagtctcatagccacagtactgtagtataacaaggtacagcctcatagccacagtactgcagtataacaaggtacagtctcatagccacagtactgcaatataacaaggtacagcctcatagccacagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1725954 lncRNA upstream 10907 366446 ~ 367431 (+) False G1508979
TU1725948 lncRNA upstream 10907 366816 ~ 367431 (+) False G1508979
TU1725949 lncRNA upstream 10907 366946 ~ 367431 (+) True G1508979
TU1725937 lncRNA upstream 22828 351903 ~ 355510 (+) True G1508972
TU1725936 lncRNA upstream 26912 350221 ~ 351426 (+) False G1508972
TU1725960 lncRNA downstream 1045 380724 ~ 382436 (+) True G1508983
TU1725985 lncRNA downstream 23685 403364 ~ 403928 (+) False G1508992
TU1725986 lncRNA downstream 23685 403364 ~ 403959 (+) False G1508992
TU1725987 lncRNA downstream 23685 403364 ~ 403959 (+) False G1508992
TU1725989 lncRNA downstream 23685 403364 ~ 403928 (+) True G1508992
XM_036951427.1 mRNA upstream 288837 76907 ~ 89501 (+) False LOC110528717
XR_005037338.1 mRNA downstream 42601 422280 ~ 426128 (+) False LOC118941071
XR_005037337.1 mRNA downstream 42601 422280 ~ 426130 (+) False LOC118941071
XR_005037336.1 mRNA downstream 42601 422280 ~ 426131 (+) False LOC118941071
XR_005037339.1 mRNA downstream 42601 422280 ~ 426131 (+) False LOC118941071
XR_005037340.1 mRNA downstream 42601 422280 ~ 426131 (+) True LOC118941071
TU1725947 other upstream 10907 364927 ~ 367431 (+) False G1508979
TU1725907 other upstream 43161 334432 ~ 335177 (+) True G1508964
TU1725647 other upstream 298392 76903 ~ 79946 (+) False LOC110528717
TU1726036 other downstream 63124 442803 ~ 444877 (+) False G1509015
TU1726040 other downstream 63124 442803 ~ 444877 (+) False G1509015
TU1726042 other downstream 63124 442803 ~ 444877 (+) False G1509015
TU1726043 other downstream 63124 442803 ~ 444877 (+) False G1509015
TU1726044 other downstream 63124 442803 ~ 444877 (+) True G1509015

Expression Profile