RNA id: TU1725989


Basic Information

Item Value
RNA id TU1725989
length 314
lncRNA type intronic
GC content 0.39
exon number 4
gene id G1508992
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 403364 ~ 403959 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatttatATAATCTACTACACTTGGAGGTTTACCAGACACATAATCTACTACAGGAGGTTTACCAGACACATAATCTACTACACTTGGAggtttaccagacacacataaTCTACTACAGGAggtttaccagacacacataaTCTACTACAGGAggtttaccagacacacataaTCTACTACAGGAggtttaccagacacacataaTCTACTACAGGAggtttaccagacacacataaTCTACTACACTTTGAGGAGGTTTACCAGACACATAATCTACTACAGGAGGTTTACCAGACACAATCTACTACAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1725960 lncRNA upstream 20928 380724 ~ 382436 (+) True G1508983
TU1725957 lncRNA upstream 23685 378338 ~ 379679 (+) True G1508981
TU1725954 lncRNA upstream 35933 366446 ~ 367431 (+) False G1508979
TU1726018 lncRNA downstream 37286 441214 ~ 441532 (+) True G1509013
TU1726031 lncRNA downstream 38875 442803 ~ 444877 (+) False G1509015
TU1726032 lncRNA downstream 38875 442803 ~ 444877 (+) False G1509015
TU1726034 lncRNA downstream 38875 442803 ~ 444877 (+) False G1509015
TU1726039 lncRNA downstream 38875 442803 ~ 444877 (+) False G1509015
XM_036951427.1 mRNA upstream 313863 76907 ~ 89501 (+) False LOC110528717
XR_005037338.1 mRNA downstream 18352 422280 ~ 426128 (+) False LOC118941071
XR_005037337.1 mRNA downstream 18352 422280 ~ 426130 (+) False LOC118941071
XR_005037336.1 mRNA downstream 18352 422280 ~ 426131 (+) False LOC118941071
XR_005037339.1 mRNA downstream 18352 422280 ~ 426131 (+) False LOC118941071
XR_005037340.1 mRNA downstream 18352 422280 ~ 426131 (+) True LOC118941071
TU1725947 other upstream 35933 364927 ~ 367431 (+) False G1508979
TU1725907 other upstream 68187 334432 ~ 335177 (+) True G1508964
TU1725647 other upstream 323418 76903 ~ 79946 (+) False LOC110528717
TU1726036 other downstream 38875 442803 ~ 444877 (+) False G1509015
TU1726040 other downstream 38875 442803 ~ 444877 (+) False G1509015
TU1726042 other downstream 38875 442803 ~ 444877 (+) False G1509015
TU1726043 other downstream 38875 442803 ~ 444877 (+) False G1509015
TU1726044 other downstream 38875 442803 ~ 444877 (+) True G1509015

Expression Profile