RNA id: TU1726031


Basic Information

Item Value
RNA id TU1726031
length 1868
lncRNA type read_through
GC content 0.42
exon number 2
gene id G1509015
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 442803 ~ 444877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGAAGTGACTTTATTACGGAACTCAACAGGAAGTGACTTTATTACGGAACTCAACAGGAAGTGACTTTATTCTTGGACATGGAACCACCATCTCAATTAGTTACCGTGGAATTTATAGAAACTGGTCGGACATTAGTCTACTAATCATAGATGAACATCCAATTCTCTTCCTTACGAAGTTAAAACATGGGAGACTCGGTTAGACCCTGGCACCTTTTTGACCTCAGACTCATTTCACTGCTCAGAGCAGTACGACACCAAAACAACAAGACACTTTCTAAATACCTTTTCCCATTAGGTTTCCAGATCTGGAATCTCTATTTAAAAAACCTTCTTCGTCATCAAACAGAAGGAACCTACGGTCTACGTATTTCTCTGCCCCTTTCGAACAAGCCCTCTCTCCATTTCAATCCTTTCTTCTTAAATACGGTCTCTCTGCGGTGCttcctacatacagtataaaacaaaCAGTCACGGTCTCTCACGTGACCAGGAAACAAGTCCAGGaagaaaccccccccccaaaaaaaaacagtttgaaCAATTCAAGGTCAGTCagacaaatttttttttttaaaaccttttgaGCGTATAAGGATCGTAAGAGACTTGAAGAAGTACACTGGGTTAGTTTCTGTGTGCTCATGTATGACCTAAACAGACAAGTTATTCCAGTCTCTGTTTCAAATCGCATAGCTAGTCTATTTTAAACACCAAATAAACCAATccattttaaataaaataaaataaacaaatgtatttagGATAACGTCAATCTAACGAGCCAGGAAACTAAAAGCAACATTATAAACGACGGGGTTTTGGTTAGTTGCTAGCTCGTTAGCCATTTCAAAAATGACCAGCACATATCTGACAATTCTTTTTTTTAGACTGTAAACCAACTTTAAATCGTCATGACAACTTTTTTAAATCATCCATCGTCGTAAAAGGAGCACTTTAATCAAATACCAAATCAAACAGTCTGTAAAGCAATGCATTTTGTAGATAGAACTGCACAGGTTGTTTGCTAGCCAGTTTTTCCACAGTTTTTTTTTCCAGTTTTTTTGTATAAAATTTTTTTATtaatatgccaacattccattcaaacacTGCAGCCAATCCACAGCCAGACACTGCAGCCAATCCACAGCCAGACACTGCAGCCAATCCACAGCCAGACACTGCAGCCAATCCACAAGCAAGACACTGCAGCCAATCCACAGCCAGACACTGCAGCCAATCCACAGCCAGACACTGCAGCCAATCCACAGCCAGACACTGCAGCCAATCCACAGCCAGACGATGCAGCCAATCCACAGCCAGACGATGCAGCCAATCCACAGCCAGACACTGTGCTGAAGTCAGTTGATAACAGGACTTAGAAAAGTTGTAAATTAAACAAGTATtgatattgtatatatatatatatttatggtcTGTGTACATCCTGTATCTTAGAGGCTGTTTACACAGAACAATAGCATCTGGGTACAGGATGGTATAAACCTGACAGTCTGTCTGTTATTTACCCATTTACCTCACTAGAGAGATAAGGAGAAGAAAGGAGTTAAACAGTGTATCTGTCTAGGGTTGTCTGTCGGCAAACTGCAGGTTGATGGGCGCAGCAGGACAGAGGACAGCCGTGGGTTTTGGTCTAGGGTTGTCTGTCGGCAAACTGCAGGTTGATGGGCGCAGCAGGACAGAGGAGGCCGTGGGTTTTGGTCTAGGGTTGTCTGTCGGCAAACTGCAGGTTGATGGGCGCAGCAGGACAGAGGAGGCCGTGGGTTTTGGCTTTGATTTCTTCTGTGATGGGACACAGCCCAATCTGGAACCTCTGGATcagctggaggagaagaagagacaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1726018 lncRNA upstream 1271 441214 ~ 441532 (+) True G1509013
TU1725986 lncRNA upstream 38844 403364 ~ 403959 (+) False G1508992
TU1725987 lncRNA upstream 38844 403364 ~ 403959 (+) False G1508992
TU1725985 lncRNA upstream 38875 403364 ~ 403928 (+) False G1508992
TU1725989 lncRNA upstream 38875 403364 ~ 403928 (+) True G1508992
TU1726066 lncRNA downstream 42313 487190 ~ 487992 (+) False G1509027
TU1726065 lncRNA downstream 42370 487247 ~ 487992 (+) False G1509027
TU1726068 lncRNA downstream 42370 487247 ~ 487992 (+) False G1509027
TU1726070 lncRNA downstream 42370 487247 ~ 487992 (+) False G1509027
TU1726071 lncRNA downstream 42370 487247 ~ 487992 (+) False G1509027
XR_005037336.1 mRNA upstream 16672 422280 ~ 426131 (+) False LOC118941071
XR_005037339.1 mRNA upstream 16672 422280 ~ 426131 (+) False LOC118941071
XR_005037340.1 mRNA upstream 16672 422280 ~ 426131 (+) True LOC118941071
XR_005037337.1 mRNA upstream 16673 422280 ~ 426130 (+) False LOC118941071
XR_005037338.1 mRNA upstream 16675 422280 ~ 426128 (+) False LOC118941071
XM_036951446.1 mRNA downstream 95503 540380 ~ 546701 (+) False LOC110516182
XR_005037347.1 mRNA downstream 95503 540380 ~ 546701 (+) False LOC110516182
XR_005037344.1 mRNA downstream 95503 540380 ~ 550487 (+) False LOC110516182
XR_005037345.1 mRNA downstream 95503 540380 ~ 550487 (+) False LOC110516182
XR_005037346.1 mRNA downstream 95503 540380 ~ 550487 (+) False LOC110516182
TU1725947 other upstream 75372 364927 ~ 367431 (+) False G1508979
TU1725907 other upstream 107626 334432 ~ 335177 (+) True G1508964
TU1725647 other upstream 362857 76903 ~ 79946 (+) False LOC110528717
TU1726118 other downstream 145022 589899 ~ 598097 (+) False LOC110515393
TU1726124 other downstream 161745 606622 ~ 607207 (+) False G1509068
TU1726125 other downstream 161745 606622 ~ 607207 (+) True G1509068
TU1726336 other downstream 335912 780789 ~ 781203 (+) True G1509212
TU1726988 other downstream 943154 1388031 ~ 1389178 (+) True G1509697

Expression Profile