RNA id: TU1726303


Basic Information

Item Value
RNA id TU1726303
length 993
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G1509188
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 712117 ~ 715516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtcagactgtagggtcctcttagataggggtcagactgtagggtcctcttagataggggtcagactgtagggtcctcttagataggggtcagactgtagggtcctcttagataggggtcagactgtagggtcctcttagataggggtcagactgtagtgtcctcttagataggggtcagactgtagtgtcctcttagataggggtcagactgtagtgtcctcttagataggggtcagactgtagtatcctcttagataggggtcagactgtaggACcctcttagataggggtcagactgtagggTCCTCTTAGATAGAGGTCAgactgtagtatcctcttagataggggtcagactgtagtttcctcttagataggggtcagaTTGTCTGCAGTGTTggattagcctatgttagctcaactgtGCCtagggggacccaccaatccagTAGAGGTATTAATTAGGATCTCTACAGATCGGTTTCCCACTCGCGGGACTGTTGAGCTAATGTTCGCTAGTGTGATTAGCATGATTAGCATTAGcatgcactgtccaatttacagtagctattacagtgaaataataccatgctattgtttaaggagagtgcaatgttttgaacatgaaaagttattaataaacgaTTCAGGCACATTTTGGCCGTCTTGACAcgacattttgaacagaaatgaaaTGTTTCATTGGATCCGTTTATaaatttgcacacacactgctgccaaaatctaaattgcatctGGGCTGAAATAATACTaatattatggcctttctctctaaaaacaaacaaaaacatttttatttttattatctcttaccagatctattgtgttatattctccaacattagtttcacatttccacaaacgtcaatgtgtttccttttaaatggtatcagagatcttctgttgatcttctgttgaatctgaccattggttgtacagtcgtctcaaataaaactgtgaaggacctcggcgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1726281 lncRNA upstream 80430 631430 ~ 631687 (+) True G1509175
TU1726115 lncRNA upstream 90840 616398 ~ 621277 (+) True LOC110515393
TU1726127 lncRNA upstream 93491 618212 ~ 618626 (+) False G1509070
TU1726128 lncRNA upstream 93491 618212 ~ 618626 (+) True G1509070
TU1726126 lncRNA upstream 97417 614161 ~ 614700 (+) True G1509069
TU1726326 lncRNA downstream 52305 767821 ~ 768025 (+) True G1509205
TU1726328 lncRNA downstream 55266 770782 ~ 771014 (+) True G1509207
TU1726341 lncRNA downstream 74162 789678 ~ 789878 (+) True LOC110495331
TU1726342 lncRNA downstream 77535 793051 ~ 793482 (+) True G1509218
TU1726345 lncRNA downstream 80356 795872 ~ 796361 (+) True G1509221
XM_036951458.1 mRNA upstream 90678 589742 ~ 621439 (+) False LOC110515393
XM_036951463.1 mRNA downstream 59334 774850 ~ 784873 (+) True LOC118941073
XM_036951464.1 mRNA downstream 74270 789786 ~ 792686 (+) False LOC110495331
LOC118941054 mRNA downstream 138854 854370 ~ 859799 (+) True LOC118941054
XM_036951393.1 mRNA downstream 1015708 1731224 ~ 1732090 (+) True LOC118941055
XM_036951475.1 mRNA downstream 1662417 2377933 ~ 2434726 (+) False tdrd3
TU1726124 other upstream 104910 606622 ~ 607207 (+) False G1509068
TU1726125 other upstream 104910 606622 ~ 607207 (+) True G1509068
TU1726118 other upstream 114020 589899 ~ 598097 (+) False LOC110515393
TU1726043 other upstream 267240 442803 ~ 444877 (+) False G1509015
TU1726336 other downstream 65273 780789 ~ 781203 (+) True G1509212
TU1726988 other downstream 672515 1388031 ~ 1389178 (+) True G1509697
TU1727296 other downstream 966776 1682292 ~ 1682858 (+) True G1509914
TU1727592 other downstream 1662561 2378077 ~ 2400927 (+) False tdrd3
TU1727593 other downstream 1664119 2379635 ~ 2400927 (+) True tdrd3