RNA id: TU1726970


Basic Information

Item Value
RNA id TU1726970
length 340
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1509679
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 1356060 ~ 1356399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagacaacaacagaaccctgatgactggagagacaacaacagaactctgatgactggagagacaacaacagaaccctgatgactggagagacaacaacagaaccctgatgactggagagacaacaacagaaccctgatgactggacagacaacaacagaaccctgatgactggagagataacaacagaaccctgatgactggagagacaacaacagaaccctgatgactggagagacaacaacagaactCTGATGACTGGAGTTTAAGATCCAAATTACCTTTCGTAATGCAATGCCATCTGTCCTGAGGTGGCAGTATAATCTTAAAATCAAACTAAAT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1726849 lncRNA upstream 21143 1334176 ~ 1334917 (+) True G1509602
TU1726841 lncRNA upstream 22679 1332194 ~ 1333381 (+) True G1509600
TU1726811 lncRNA upstream 60547 1292143 ~ 1295513 (+) True G1509578
TU1726776 lncRNA upstream 110409 1243840 ~ 1245651 (+) True G1509557
TU1726773 lncRNA upstream 122540 1232971 ~ 1233520 (+) True G1509554
TU1726986 lncRNA downstream 29634 1386033 ~ 1386715 (+) True G1509695
TU1726990 lncRNA downstream 37710 1394109 ~ 1394603 (+) True G1509699
TU1727004 lncRNA downstream 66379 1422778 ~ 1423311 (+) False G1509712
TU1727003 lncRNA downstream 66557 1422956 ~ 1423311 (+) True G1509712
TU1727035 lncRNA downstream 162619 1519018 ~ 1519508 (+) True G1509739
LOC118941054 mRNA upstream 496261 854370 ~ 859799 (+) True LOC118941054
XM_036951464.1 mRNA upstream 563374 789786 ~ 792686 (+) False LOC110495331
XM_036951463.1 mRNA upstream 571187 774850 ~ 784873 (+) True LOC118941073
XM_036951461.1 mRNA upstream 734621 589742 ~ 621439 (+) False LOC110515393
XM_036951393.1 mRNA downstream 374825 1731224 ~ 1732090 (+) True LOC118941055
XM_036951475.1 mRNA downstream 1021534 2377933 ~ 2434726 (+) False tdrd3
XM_036951473.1 mRNA downstream 1021534 2377933 ~ 2435950 (+) False tdrd3
XM_036951470.1 mRNA downstream 1021534 2377933 ~ 2453770 (+) False tdrd3
XM_036951471.1 mRNA downstream 1021534 2377933 ~ 2453770 (+) False tdrd3
TU1726336 other upstream 574857 780789 ~ 781203 (+) True G1509212
TU1726124 other upstream 748853 606622 ~ 607207 (+) False G1509068
TU1726125 other upstream 748853 606622 ~ 607207 (+) True G1509068
TU1726118 other upstream 757963 589899 ~ 598097 (+) False LOC110515393
TU1726044 other upstream 911183 442803 ~ 444877 (+) True G1509015
TU1726988 other downstream 31632 1388031 ~ 1389178 (+) True G1509697
TU1727296 other downstream 325893 1682292 ~ 1682858 (+) True G1509914
TU1727592 other downstream 1021678 2378077 ~ 2400927 (+) False tdrd3
TU1727593 other downstream 1023236 2379635 ~ 2400927 (+) True tdrd3
TU1727953 other downstream 1177913 2534312 ~ 2534675 (+) True G1510408

Expression Profile