RNA id: TU1727096


Basic Information

Item Value
RNA id TU1727096
length 234
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1509795
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 1528151 ~ 1528384 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acggcagggtagcctagtggttagagtgttggactagtaaccgaaaggttgcaagttcgaatccccgagctgactaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagtatttgttcttaactgacttaaaccAGATACAGATTTGATTGATATACCAGATGCAGGGAAGAGGTATATATATACCAGGTACAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1727035 lncRNA upstream 8643 1519018 ~ 1519508 (+) True G1509739
TU1727004 lncRNA upstream 104840 1422778 ~ 1423311 (+) False G1509712
TU1727003 lncRNA upstream 104840 1422956 ~ 1423311 (+) True G1509712
TU1726990 lncRNA upstream 133548 1394109 ~ 1394603 (+) True G1509699
TU1726986 lncRNA upstream 141436 1386033 ~ 1386715 (+) True G1509695
TU1727123 lncRNA downstream 14838 1543222 ~ 1543424 (+) True G1509813
TU1727128 lncRNA downstream 21676 1550060 ~ 1550266 (+) True G1509818
TU1727129 lncRNA downstream 22622 1551006 ~ 1551282 (+) True G1509819
TU1727131 lncRNA downstream 36708 1565092 ~ 1565317 (+) True G1509821
TU1727145 lncRNA downstream 47453 1575837 ~ 1576053 (+) True G1509832
LOC118941054 mRNA upstream 668352 854370 ~ 859799 (+) True LOC118941054
XM_036951464.1 mRNA upstream 735465 789786 ~ 792686 (+) False LOC110495331
XM_036951463.1 mRNA upstream 743278 774850 ~ 784873 (+) True LOC118941073
XM_036951461.1 mRNA upstream 906712 589742 ~ 621439 (+) False LOC110515393
XM_036951393.1 mRNA downstream 202840 1731224 ~ 1732090 (+) True LOC118941055
XM_036951475.1 mRNA downstream 849549 2377933 ~ 2434726 (+) False tdrd3
XM_036951473.1 mRNA downstream 849549 2377933 ~ 2435950 (+) False tdrd3
XM_036951470.1 mRNA downstream 849549 2377933 ~ 2453770 (+) False tdrd3
XM_036951471.1 mRNA downstream 849549 2377933 ~ 2453770 (+) False tdrd3
TU1726988 other upstream 138973 1388031 ~ 1389178 (+) True G1509697
TU1726336 other upstream 746948 780789 ~ 781203 (+) True G1509212
TU1726124 other upstream 920944 606622 ~ 607207 (+) False G1509068
TU1726125 other upstream 920944 606622 ~ 607207 (+) True G1509068
TU1726118 other upstream 930054 589899 ~ 598097 (+) False LOC110515393
TU1727296 other downstream 153908 1682292 ~ 1682858 (+) True G1509914
TU1727592 other downstream 849693 2378077 ~ 2400927 (+) False tdrd3
TU1727593 other downstream 851251 2379635 ~ 2400927 (+) True tdrd3
TU1727953 other downstream 1005928 2534312 ~ 2534675 (+) True G1510408
TU1728124 other downstream 1176458 2704842 ~ 2705497 (+) True G1510524

Expression Profile