RNA id: TU1727479


Basic Information

Item Value
RNA id TU1727479
length 247
lncRNA type intronic
GC content 0.37
exon number 2
gene id G1510049
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 2062594 ~ 2062916 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgatgataatcctagtcatattagcatcccatgctagttgatgataatcctattcatattagcatcccatgctagttgatgataatcctagtcatattagcatcccatgctagttgatgataatcctagtcatattagcatcccatgctaggtgatgataatcctagtcaaattagcatcccatgctagttgatgataatcctagtcaaattagcatcccatgctagttgatgacaatcctagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1727476 lncRNA upstream 5101 2056044 ~ 2057493 (+) False G1510047
TU1727477 lncRNA upstream 5101 2056044 ~ 2057493 (+) True G1510047
TU1727460 lncRNA upstream 60475 2000101 ~ 2002119 (+) False G1510035
TU1727459 lncRNA upstream 60475 2001623 ~ 2002119 (+) True G1510035
TU1727450 lncRNA upstream 83196 1978492 ~ 1979398 (+) True G1510027
TU1727487 lncRNA downstream 36155 2099071 ~ 2100017 (+) True G1510055
TU1727491 lncRNA downstream 60520 2123436 ~ 2123999 (+) True G1510059
TU1727507 lncRNA downstream 89684 2152600 ~ 2154825 (+) True G1510073
TU1727557 lncRNA downstream 213179 2276095 ~ 2340004 (+) True G1510111
TU1727580 lncRNA downstream 273496 2336412 ~ 2336813 (+) True G1510130
XM_036951393.1 mRNA upstream 330504 1731224 ~ 1732090 (+) True LOC118941055
LOC118941054 mRNA upstream 1202795 854370 ~ 859799 (+) True LOC118941054
XM_036951464.1 mRNA upstream 1269908 789786 ~ 792686 (+) False LOC110495331
XM_036951463.1 mRNA upstream 1277721 774850 ~ 784873 (+) True LOC118941073
XM_036951462.1 mRNA upstream 1441155 589742 ~ 621439 (+) False LOC110515393
XM_036951475.1 mRNA downstream 315017 2377933 ~ 2434726 (+) False tdrd3
XM_036951473.1 mRNA downstream 315017 2377933 ~ 2435950 (+) False tdrd3
XM_036951470.1 mRNA downstream 315017 2377933 ~ 2453770 (+) False tdrd3
XM_036951471.1 mRNA downstream 315017 2377933 ~ 2453770 (+) False tdrd3
XM_036951472.1 mRNA downstream 315017 2377933 ~ 2453770 (+) False tdrd3
TU1727296 other upstream 379736 1682292 ~ 1682858 (+) True G1509914
TU1726988 other upstream 673416 1388031 ~ 1389178 (+) True G1509697
TU1726336 other upstream 1281391 780789 ~ 781203 (+) True G1509212
TU1726124 other upstream 1455387 606622 ~ 607207 (+) False G1509068
TU1727592 other downstream 315161 2378077 ~ 2400927 (+) False tdrd3
TU1727593 other downstream 316719 2379635 ~ 2400927 (+) True tdrd3
TU1727953 other downstream 471396 2534312 ~ 2534675 (+) True G1510408
TU1728124 other downstream 641926 2704842 ~ 2705497 (+) True G1510524
TU1728127 other downstream 645797 2708713 ~ 2709747 (+) True G1510527

Expression Profile