RNA id: TU1727491


Basic Information

Item Value
RNA id TU1727491
length 332
lncRNA type intronic
GC content 0.52
exon number 2
gene id G1510059
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 2123436 ~ 2123999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGGTCGTCATGACTCTCGTCCAGGTTGACCTTTTGGTCGTCATGACTCTCGTCCAGGTTGGCTTTTGGTCGTCATGACTCTCGTCCAGGTTGACCTTTTGGTCGTCATGACTCTCGTCCAGGTTGGCCTTTTgtcgtgaagcatggtggtggcagcatcattctgtgaaggactgggagactggtcatgatggaggaaacctggcaccatccctacggtgaagcatggtggtggcagcatcatgctgtggggaactgggagactagtcatgatggaggtaaagatgaacggagcaaagaacagagagatccttaatgaaaacctgctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1727487 lncRNA upstream 23419 2099071 ~ 2100017 (+) True G1510055
TU1727479 lncRNA upstream 60520 2062594 ~ 2062916 (+) True G1510049
TU1727476 lncRNA upstream 65943 2056044 ~ 2057493 (+) False G1510047
TU1727477 lncRNA upstream 65943 2056044 ~ 2057493 (+) True G1510047
TU1727460 lncRNA upstream 121317 2000101 ~ 2002119 (+) False G1510035
TU1727507 lncRNA downstream 28601 2152600 ~ 2154825 (+) True G1510073
TU1727557 lncRNA downstream 152096 2276095 ~ 2340004 (+) True G1510111
TU1727580 lncRNA downstream 212413 2336412 ~ 2336813 (+) True G1510130
TU1727588 lncRNA downstream 238590 2362589 ~ 2364146 (+) True G1510138
TU1727589 lncRNA downstream 241063 2365062 ~ 2365516 (+) True G1510139
XM_036951393.1 mRNA upstream 391346 1731224 ~ 1732090 (+) True LOC118941055
LOC118941054 mRNA upstream 1263637 854370 ~ 859799 (+) True LOC118941054
XM_036951464.1 mRNA upstream 1330750 789786 ~ 792686 (+) False LOC110495331
XM_036951463.1 mRNA upstream 1338563 774850 ~ 784873 (+) True LOC118941073
XM_036951462.1 mRNA upstream 1501997 589742 ~ 621439 (+) False LOC110515393
XM_036951475.1 mRNA downstream 253934 2377933 ~ 2434726 (+) False tdrd3
XM_036951473.1 mRNA downstream 253934 2377933 ~ 2435950 (+) False tdrd3
XM_036951470.1 mRNA downstream 253934 2377933 ~ 2453770 (+) False tdrd3
XM_036951471.1 mRNA downstream 253934 2377933 ~ 2453770 (+) False tdrd3
XM_036951472.1 mRNA downstream 253934 2377933 ~ 2453770 (+) False tdrd3
TU1727296 other upstream 440578 1682292 ~ 1682858 (+) True G1509914
TU1726988 other upstream 734258 1388031 ~ 1389178 (+) True G1509697
TU1726336 other upstream 1342233 780789 ~ 781203 (+) True G1509212
TU1726124 other upstream 1516229 606622 ~ 607207 (+) False G1509068
TU1727592 other downstream 254078 2378077 ~ 2400927 (+) False tdrd3
TU1727593 other downstream 255636 2379635 ~ 2400927 (+) True tdrd3
TU1727953 other downstream 410313 2534312 ~ 2534675 (+) True G1510408
TU1728124 other downstream 580843 2704842 ~ 2705497 (+) True G1510524
TU1728127 other downstream 584714 2708713 ~ 2709747 (+) True G1510527

Expression Profile