RNA id: TU1727557


Basic Information

Item Value
RNA id TU1727557
length 569
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1510111
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 2276095 ~ 2340004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagagagagagagagagagagacagagagagagagagagacagagagagacagagagagacagagagagacagagagagagagagagagagagagagagagagagagagagagacagagagagacagagagagacagagagagacagagagagagagacagagagagacagagagagacagagagagagagagagagagagagagagacagagagagacagagagagagagagagacagagagacagagagagaaaagcgaCGCCTTCAAAGATGCTAACGAGCTAGCTAACTATCACGGTCGGATTGCCTTAATCCTATTTGTGGCTTTTCAGGTAGTTTGCCTTCCAAGACGTATAGAAAAGATAAACTACTGTTATCAACACGTTTTCTTGAATACTATTGTTGAAATATTTGCAAAACGATGTTGACAAAGTCAGTTAAGCTATCAGACAACGTTAAAGCGAGTTGATATTTTTACAGCTCAAACTTctgactgtaaaaaaaaaatgttcagtCCGAAAACCGCGCCACCAGAAGTTGTCAGTGTGACGTTGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1727507 lncRNA upstream 121270 2152600 ~ 2154825 (+) True G1510073
TU1727491 lncRNA upstream 152096 2123436 ~ 2123999 (+) True G1510059
TU1727487 lncRNA upstream 176078 2099071 ~ 2100017 (+) True G1510055
TU1727479 lncRNA upstream 213179 2062594 ~ 2062916 (+) True G1510049
TU1727476 lncRNA upstream 218602 2056044 ~ 2057493 (+) False G1510047
TU1727588 lncRNA downstream 22585 2362589 ~ 2364146 (+) True G1510138
TU1727589 lncRNA downstream 25058 2365062 ~ 2365516 (+) True G1510139
TU1727594 lncRNA downstream 41759 2381763 ~ 2382612 (+) True G1510143
TU1727597 lncRNA downstream 45041 2385045 ~ 2385373 (+) True G1510146
TU1727607 lncRNA downstream 68217 2408221 ~ 2409769 (+) True G1510154
XM_036951393.1 mRNA upstream 544005 1731224 ~ 1732090 (+) True LOC118941055
LOC118941054 mRNA upstream 1416296 854370 ~ 859799 (+) True LOC118941054
XM_036951464.1 mRNA upstream 1483409 789786 ~ 792686 (+) False LOC110495331
XM_036951463.1 mRNA upstream 1491222 774850 ~ 784873 (+) True LOC118941073
XM_036951462.1 mRNA upstream 1654656 589742 ~ 621439 (+) False LOC110515393
XM_036951475.1 mRNA downstream 37929 2377933 ~ 2434726 (+) False tdrd3
XM_036951473.1 mRNA downstream 37929 2377933 ~ 2435950 (+) False tdrd3
XM_036951470.1 mRNA downstream 37929 2377933 ~ 2453770 (+) False tdrd3
XM_036951471.1 mRNA downstream 37929 2377933 ~ 2453770 (+) False tdrd3
XM_036951472.1 mRNA downstream 37929 2377933 ~ 2453770 (+) False tdrd3
TU1727296 other upstream 593237 1682292 ~ 1682858 (+) True G1509914
TU1726988 other upstream 886917 1388031 ~ 1389178 (+) True G1509697
TU1726336 other upstream 1494892 780789 ~ 781203 (+) True G1509212
TU1726124 other upstream 1668888 606622 ~ 607207 (+) False G1509068
TU1727592 other downstream 38073 2378077 ~ 2400927 (+) False tdrd3
TU1727593 other downstream 39631 2379635 ~ 2400927 (+) True tdrd3
TU1727953 other downstream 194308 2534312 ~ 2534675 (+) True G1510408
TU1728124 other downstream 364838 2704842 ~ 2705497 (+) True G1510524
TU1728127 other downstream 368709 2708713 ~ 2709747 (+) True G1510527

Expression Profile