RNA id: TU1727607


Basic Information

Item Value
RNA id TU1727607
length 380
lncRNA type intronic
GC content 0.46
exon number 2
gene id G1510154
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 2408221 ~ 2409769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcttctccctacaaggttcAGTTAGGAGTCCTGTCctttaccaatagtcttctccctacaaggtacagtcctgtcctctaccaatagtcttctccctacaaggtacagtcctgtcctctaccaatagtcttctccctacaaggttcagtcctgtcctttaccaatagtcttctccctacaaggtacagtcctgtcctctaccaatagtcttctccctacaaggttcAGTTAGGAtcctgtcctctaccaatagtcttctccctacaaggtacAGTTAGGAGTCCTGTCCtctaccaatagtcttctccctacaaggtacagtcctgtcctctaccaatagtattctccctacaaggtacagtcctgtcctctaccaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1727597 lncRNA upstream 22848 2385045 ~ 2385373 (+) True G1510146
TU1727594 lncRNA upstream 25609 2381763 ~ 2382612 (+) True G1510143
TU1727589 lncRNA upstream 42705 2365062 ~ 2365516 (+) True G1510139
TU1727588 lncRNA upstream 44075 2362589 ~ 2364146 (+) True G1510138
TU1727557 lncRNA upstream 68217 2276095 ~ 2340004 (+) True G1510111
TU1727939 lncRNA downstream 94411 2504180 ~ 2504701 (+) True G1510396
TU1727944 lncRNA downstream 108291 2518060 ~ 2518365 (+) True G1510400
TU1727948 lncRNA downstream 115519 2525288 ~ 2552109 (+) True G1510403
TU1727959 lncRNA downstream 131427 2541196 ~ 2542349 (+) True G1510414
TU1727965 lncRNA downstream 138590 2548359 ~ 2549308 (+) False G1510419
XM_036951393.1 mRNA upstream 676131 1731224 ~ 1732090 (+) True LOC118941055
LOC118941054 mRNA upstream 1548422 854370 ~ 859799 (+) True LOC118941054
XM_036951464.1 mRNA upstream 1615535 789786 ~ 792686 (+) False LOC110495331
XM_036951463.1 mRNA upstream 1623348 774850 ~ 784873 (+) True LOC118941073
XM_036951462.1 mRNA upstream 1786782 589742 ~ 621439 (+) False LOC110515393
XM_036951394.1 mRNA downstream 804269 3214038 ~ 3214454 (+) True LOC118941056
XM_036951395.1 mRNA downstream 889672 3299441 ~ 3300228 (+) True LOC118941057
XM_036951379.1 mRNA downstream 2208319 4618088 ~ 4624857 (+) True LOC118941040
XM_036951124.1 mRNA downstream 2244272 4654041 ~ 4686334 (+) False LOC110516278
XM_036951129.1 mRNA downstream 2244281 4654050 ~ 4748243 (+) False LOC110516278
TU1727592 other upstream 7294 2378077 ~ 2400927 (+) False tdrd3
TU1727593 other upstream 7294 2379635 ~ 2400927 (+) True tdrd3
TU1727296 other upstream 725363 1682292 ~ 1682858 (+) True G1509914
TU1726988 other upstream 1019043 1388031 ~ 1389178 (+) True G1509697
TU1726336 other upstream 1627018 780789 ~ 781203 (+) True G1509212
TU1727953 other downstream 124543 2534312 ~ 2534675 (+) True G1510408
TU1728124 other downstream 295073 2704842 ~ 2705497 (+) True G1510524
TU1728127 other downstream 298944 2708713 ~ 2709747 (+) True G1510527
TU1728263 other downstream 462625 2872394 ~ 2874166 (+) True G1510639
TU1729203 other downstream 1871647 4281416 ~ 4284944 (+) True G1511398

Expression Profile