RNA id: TU1727977


Basic Information

Item Value
RNA id TU1727977
length 860
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G1510428
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 2569674 ~ 2571934 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcttcttctctcattggggtgtctcttgtctgatgttctcttcttcttctctcattggggtatctcttgtctgatgttctcttcttcttctctcattggggtgtctcttgtttgatgttctcttcttctctcattggggtgtctcttgtctgatgttctcttcttcttctctcattggggtatctcttgtctgatgttctcttcttctctcattggggtgtctcttgtctgatgttctcttcttctctcattggggtgtctcttgtctgatgttctcttcttctctcattggggtgtctcttgtctgatgttctcttcttctctcattggggtgtctcttgtctgatgttgtcttcttcttctctcattggggtatctcttgtctgatgttctcttcttcttctctcattggggtatctcttgtctgatgttctcttcttcttctctcattggggtgtctcttgtctgatgttctcttcttctctcattggggtgtctcttgtctgatgttctcttcttcttctctcattggggtgtctcttgtctgatgttctcttcttcttctctcattggggtgtctcttgtctgatgttctcttcttcttctctcattggggtgtctcttgtctgatgttctcttcttctctcattggggtgtctcttgtctgatgttctcttcttcttctctcattggggtatctcttgtctgatgttctcttcttcttctctcattggggtgtctcttgtctgatgttctcttcttcttctctcattggggtatctcttgtctgatgttctcttcttctctcattggggtgtctcttgtctgatgttctcttcttcttctctcattggggtgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1727948 lncRNA upstream 17565 2525288 ~ 2552109 (+) True G1510403
TU1727965 lncRNA upstream 20366 2548359 ~ 2549308 (+) False G1510419
TU1727966 lncRNA upstream 20366 2548359 ~ 2549308 (+) True G1510419
TU1727959 lncRNA upstream 27325 2541196 ~ 2542349 (+) True G1510414
TU1727944 lncRNA upstream 51309 2518060 ~ 2518365 (+) True G1510400
TU1728094 lncRNA downstream 91535 2663469 ~ 2663938 (+) True G1510501
TU1728126 lncRNA downstream 136220 2708154 ~ 2708372 (+) True G1510526
TU1728139 lncRNA downstream 165750 2737684 ~ 2738258 (+) True G1510538
TU1728150 lncRNA downstream 199076 2771010 ~ 2771728 (+) True G1510547
TU1728240 lncRNA downstream 282551 2854485 ~ 2854771 (+) True G1510621
XM_036951470.1 mRNA upstream 115904 2377933 ~ 2453770 (+) False tdrd3
XM_036951471.1 mRNA upstream 115904 2377933 ~ 2453770 (+) False tdrd3
XM_036951472.1 mRNA upstream 115904 2377933 ~ 2453770 (+) False tdrd3
XM_036951474.1 mRNA upstream 115904 2377933 ~ 2453770 (+) False tdrd3
XM_036951473.1 mRNA upstream 133724 2377933 ~ 2435950 (+) False tdrd3
XM_036951394.1 mRNA downstream 642104 3214038 ~ 3214454 (+) True LOC118941056
XM_036951395.1 mRNA downstream 727507 3299441 ~ 3300228 (+) True LOC118941057
XM_036951379.1 mRNA downstream 2046154 4618088 ~ 4624857 (+) True LOC118941040
XM_036951124.1 mRNA downstream 2082107 4654041 ~ 4686334 (+) False LOC110516278
XM_036951129.1 mRNA downstream 2082116 4654050 ~ 4748243 (+) False LOC110516278
TU1727953 other upstream 34999 2534312 ~ 2534675 (+) True G1510408
TU1727592 other upstream 168747 2378077 ~ 2400927 (+) False tdrd3
TU1727593 other upstream 168747 2379635 ~ 2400927 (+) True tdrd3
TU1727296 other upstream 886816 1682292 ~ 1682858 (+) True G1509914
TU1726988 other upstream 1180496 1388031 ~ 1389178 (+) True G1509697
TU1728124 other downstream 132908 2704842 ~ 2705497 (+) True G1510524
TU1728127 other downstream 136779 2708713 ~ 2709747 (+) True G1510527
TU1728263 other downstream 300460 2872394 ~ 2874166 (+) True G1510639
TU1729203 other downstream 1709482 4281416 ~ 4284944 (+) True G1511398
TU1729999 other downstream 2038084 4610018 ~ 4617952 (+) False G1512020

Expression Profile