RNA id: TU1729032


Basic Information

Item Value
RNA id TU1729032
length 289
lncRNA type intronic
GC content 0.47
exon number 1
gene id G1511259
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 3908102 ~ 3908390 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtaccgacctctgggtgatgtactactccacctctaacagtcagtttagtaccgacctctgggtgatgtactactccacctctaacagtcagtttagtaccgacctctgggtgatgtactactccacctctaacagtcagtttagtaccgacctctgggtgatgtactacagtactactccacctctaacagtcagtttagtactgacctctgggtgatgtactacagtactactccacctctaacagtcagtttagtaccgacctctgggtgatgtactacagtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1729029 lncRNA upstream 12593 3895159 ~ 3895509 (+) True G1511256
TU1729008 lncRNA upstream 37852 3870018 ~ 3870250 (+) True G1511237
TU1729004 lncRNA upstream 42805 3865074 ~ 3865297 (+) True G1511233
TU1728987 lncRNA upstream 75748 3828596 ~ 3832354 (+) True G1511221
TU1728982 lncRNA upstream 80183 3827561 ~ 3827919 (+) True G1511220
TU1729049 lncRNA downstream 56895 3965285 ~ 3966346 (+) True G1511275
TU1729053 lncRNA downstream 60743 3969133 ~ 3969457 (+) True G1511278
TU1729061 lncRNA downstream 85945 3994335 ~ 3994755 (+) True G1511286
TU1729068 lncRNA downstream 116319 4024709 ~ 4025748 (+) True G1511293
TU1729106 lncRNA downstream 203906 4112296 ~ 4112950 (+) True G1511329
XM_036951395.1 mRNA upstream 607874 3299441 ~ 3300228 (+) True LOC118941057
XM_036951394.1 mRNA upstream 693648 3214038 ~ 3214454 (+) True LOC118941056
XM_036951471.1 mRNA upstream 1454332 2377933 ~ 2453770 (+) False tdrd3
XM_036951379.1 mRNA downstream 709698 4618088 ~ 4624857 (+) True LOC118941040
XM_036951124.1 mRNA downstream 745651 4654041 ~ 4686334 (+) False LOC110516278
XM_036951129.1 mRNA downstream 745660 4654050 ~ 4748243 (+) False LOC110516278
XM_036951121.1 mRNA downstream 745676 4654066 ~ 4686334 (+) False LOC110516278
XM_036951122.1 mRNA downstream 745695 4654085 ~ 4723559 (+) False LOC110516278
TU1728263 other upstream 1033936 2872394 ~ 2874166 (+) True G1510639
TU1728127 other upstream 1198355 2708713 ~ 2709747 (+) True G1510527
TU1728124 other upstream 1202605 2704842 ~ 2705497 (+) True G1510524
TU1727953 other upstream 1373427 2534312 ~ 2534675 (+) True G1510408
TU1727593 other upstream 1507175 2379635 ~ 2400927 (+) True tdrd3
TU1729203 other downstream 373026 4281416 ~ 4284944 (+) True G1511398
TU1729999 other downstream 701628 4610018 ~ 4617952 (+) False G1512020
TU1730000 other downstream 701628 4610018 ~ 4616749 (+) True G1512020
TU1730118 other downstream 957605 4865995 ~ 4868008 (+) True G1512113
TU1729941 other downstream 1110870 5019260 ~ 5026330 (+) True LOC110495595

Expression Profile