RNA id: TU1729068


Basic Information

Item Value
RNA id TU1729068
length 495
lncRNA type intronic
GC content 0.45
exon number 2
gene id G1511293
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4024709 ~ 4025748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAGGGGGGAGGGGTTGTGCCTCTCCATAAACAACAACCGGTGTGCGACATACAGTGTGAAGGAGATCTAGAGCTTTTGTTCAcctgatatacactgctcaaaaaaataaagggaacacttaaacaacacaatgtaactcccaagtcaatcacacttctgtgaaatcaaactgtccacttaggaagcaacactgattgacaataaatgtcacatgctgttgtgcaaatggaataaacaacaggtggaaattataggcaattagcaagacacccccaataaaggagtggttctgcaggtggggaccacagaccacttctcagttcctatgcttcctggctgatgttttggtcacttttgaatgctgccggtgctttcactcttgtggtagcatgagacctacaggagggtctctctccaggaacagggttggagttaaaacctacaggagggtctctctctaggaacagggttggagttaaaacctacaggaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1729061 lncRNA upstream 29954 3994335 ~ 3994755 (+) True G1511286
TU1729053 lncRNA upstream 55252 3969133 ~ 3969457 (+) True G1511278
TU1729049 lncRNA upstream 58363 3965285 ~ 3966346 (+) True G1511275
TU1729032 lncRNA upstream 116319 3908102 ~ 3908390 (+) True G1511259
TU1729029 lncRNA upstream 129200 3895159 ~ 3895509 (+) True G1511256
TU1729106 lncRNA downstream 86548 4112296 ~ 4112950 (+) True G1511329
TU1729107 lncRNA downstream 88904 4114652 ~ 4115077 (+) True G1511330
TU1729111 lncRNA downstream 96136 4121884 ~ 4122319 (+) False G1511334
TU1729113 lncRNA downstream 96136 4121884 ~ 4122319 (+) True G1511334
TU1729122 lncRNA downstream 105613 4131361 ~ 4131810 (+) True G1511338
XM_036951395.1 mRNA upstream 724481 3299441 ~ 3300228 (+) True LOC118941057
XM_036951394.1 mRNA upstream 810255 3214038 ~ 3214454 (+) True LOC118941056
XM_036951471.1 mRNA upstream 1570939 2377933 ~ 2453770 (+) False tdrd3
XM_036951379.1 mRNA downstream 592340 4618088 ~ 4624857 (+) True LOC118941040
XM_036951124.1 mRNA downstream 628293 4654041 ~ 4686334 (+) False LOC110516278
XM_036951129.1 mRNA downstream 628302 4654050 ~ 4748243 (+) False LOC110516278
XM_036951121.1 mRNA downstream 628318 4654066 ~ 4686334 (+) False LOC110516278
XM_036951122.1 mRNA downstream 628337 4654085 ~ 4723559 (+) False LOC110516278
TU1728263 other upstream 1150543 2872394 ~ 2874166 (+) True G1510639
TU1728127 other upstream 1314962 2708713 ~ 2709747 (+) True G1510527
TU1728124 other upstream 1319212 2704842 ~ 2705497 (+) True G1510524
TU1727953 other upstream 1490034 2534312 ~ 2534675 (+) True G1510408
TU1727593 other upstream 1623782 2379635 ~ 2400927 (+) True tdrd3
TU1729203 other downstream 255668 4281416 ~ 4284944 (+) True G1511398
TU1729999 other downstream 584270 4610018 ~ 4617952 (+) False G1512020
TU1730000 other downstream 584270 4610018 ~ 4616749 (+) True G1512020
TU1730118 other downstream 840247 4865995 ~ 4868008 (+) True G1512113
TU1729941 other downstream 993512 5019260 ~ 5026330 (+) True LOC110495595

Expression Profile