RNA id: TU1729111


Basic Information

Item Value
RNA id TU1729111
length 378
lncRNA type intronic
GC content 0.53
exon number 2
gene id G1511334
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4121884 ~ 4122319 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGGTTTGGGAGGGAGGACAGACAGCACAGAGGTTTGGGAGGGAGGACAGACAGCACAGAGGTTTGGGAGGGAGGACAGACAGCACAGAGGTTCAGGAAGgaggacagacaacacagagattcaggaaggaggacagacagcacagaggttcaggaaggaggacagacaacacagaggttcaggaaggaggacagacagcacagaggttcaggaaggaggacagacagcacagaggttcaggaaggaggacagacaacacagaggtTCAGGAAGGAGGACAGACAACACACAGGTTCAGGAGGGAGGACAGACAGCACAACACAGAGGTTCAGGAAGGAGGACAGACAACACACAGGttccaaaatggagatgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1729107 lncRNA upstream 6807 4114652 ~ 4115077 (+) True G1511330
TU1729106 lncRNA upstream 8934 4112296 ~ 4112950 (+) True G1511329
TU1729068 lncRNA upstream 96136 4024709 ~ 4025748 (+) True G1511293
TU1729061 lncRNA upstream 127129 3994335 ~ 3994755 (+) True G1511286
TU1729053 lncRNA upstream 152427 3969133 ~ 3969457 (+) True G1511278
TU1729122 lncRNA downstream 9042 4131361 ~ 4131810 (+) True G1511338
TU1729127 lncRNA downstream 18695 4141014 ~ 4141522 (+) False G1511342
TU1729130 lncRNA downstream 18695 4141014 ~ 4141736 (+) True G1511342
TU1729131 lncRNA downstream 20551 4142870 ~ 4143201 (+) True G1511343
TU1729135 lncRNA downstream 26508 4148827 ~ 4149182 (+) True G1511347
XM_036951395.1 mRNA upstream 821656 3299441 ~ 3300228 (+) True LOC118941057
XM_036951394.1 mRNA upstream 907430 3214038 ~ 3214454 (+) True LOC118941056
XM_036951471.1 mRNA upstream 1668114 2377933 ~ 2453770 (+) False tdrd3
XM_036951379.1 mRNA downstream 495769 4618088 ~ 4624857 (+) True LOC118941040
XM_036951124.1 mRNA downstream 531722 4654041 ~ 4686334 (+) False LOC110516278
XM_036951129.1 mRNA downstream 531731 4654050 ~ 4748243 (+) False LOC110516278
XM_036951121.1 mRNA downstream 531747 4654066 ~ 4686334 (+) False LOC110516278
XM_036951122.1 mRNA downstream 531766 4654085 ~ 4723559 (+) False LOC110516278
TU1728263 other upstream 1247718 2872394 ~ 2874166 (+) True G1510639
TU1728127 other upstream 1412137 2708713 ~ 2709747 (+) True G1510527
TU1728124 other upstream 1416387 2704842 ~ 2705497 (+) True G1510524
TU1727953 other upstream 1587209 2534312 ~ 2534675 (+) True G1510408
TU1727593 other upstream 1720957 2379635 ~ 2400927 (+) True tdrd3
TU1729203 other downstream 159097 4281416 ~ 4284944 (+) True G1511398
TU1729999 other downstream 487699 4610018 ~ 4617952 (+) False G1512020
TU1730000 other downstream 487699 4610018 ~ 4616749 (+) True G1512020
TU1730118 other downstream 743676 4865995 ~ 4868008 (+) True G1512113
TU1729941 other downstream 896941 5019260 ~ 5026330 (+) True LOC110495595

Expression Profile