RNA id: TU1729169


Basic Information

Item Value
RNA id TU1729169
length 330
lncRNA type intronic
GC content 0.49
exon number 2
gene id G1511372
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4211691 ~ 4212864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagaggtgtggtagagtataggagagagtagaggtgtggtacagtagaggtgtggtagagtagaggtgtggtagaggtgtggtagagtagaggtgtggtagagtagaggtgtggtagaggtgtggtagagtagaggtgtggtagaatagaggtgtggtagagatgtggtagagtagaggtgtggtagaatagaggtgtggtagaggtgtggtagagtagaggtgtggtagaggtgtggtagagtagaggtgtggtagaggtgtggtagaatagaggtgtggtagaggtgtggtagaatagaggtgtggtagagtagaggtgtggtagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1729161 lncRNA upstream 23727 4185951 ~ 4187964 (+) True G1511364
TU1729135 lncRNA upstream 62509 4148827 ~ 4149182 (+) True G1511347
TU1729131 lncRNA upstream 68490 4142870 ~ 4143201 (+) True G1511343
TU1729130 lncRNA upstream 69955 4141014 ~ 4141736 (+) True G1511342
TU1729127 lncRNA upstream 70169 4141014 ~ 4141522 (+) False G1511342
TU1729195 lncRNA downstream 63397 4276261 ~ 4277973 (+) False G1511394
TU1729196 lncRNA downstream 63397 4276261 ~ 4276819 (+) True G1511394
TU1729198 lncRNA downstream 65951 4278815 ~ 4279083 (+) True G1511396
TU1729199 lncRNA downstream 66281 4279145 ~ 4280525 (+) False G1511397
TU1729200 lncRNA downstream 66281 4279145 ~ 4280525 (+) True G1511397
XM_036951395.1 mRNA upstream 911463 3299441 ~ 3300228 (+) True LOC118941057
XM_036951394.1 mRNA upstream 997237 3214038 ~ 3214454 (+) True LOC118941056
XM_036951471.1 mRNA upstream 1757921 2377933 ~ 2453770 (+) False tdrd3
XM_036951379.1 mRNA downstream 405224 4618088 ~ 4624857 (+) True LOC118941040
XM_036951124.1 mRNA downstream 441177 4654041 ~ 4686334 (+) False LOC110516278
XM_036951129.1 mRNA downstream 441186 4654050 ~ 4748243 (+) False LOC110516278
XM_036951121.1 mRNA downstream 441202 4654066 ~ 4686334 (+) False LOC110516278
XM_036951122.1 mRNA downstream 441221 4654085 ~ 4723559 (+) False LOC110516278
TU1728263 other upstream 1337525 2872394 ~ 2874166 (+) True G1510639
TU1728127 other upstream 1501944 2708713 ~ 2709747 (+) True G1510527
TU1728124 other upstream 1506194 2704842 ~ 2705497 (+) True G1510524
TU1727953 other upstream 1677016 2534312 ~ 2534675 (+) True G1510408
TU1727593 other upstream 1810764 2379635 ~ 2400927 (+) True tdrd3
TU1729203 other downstream 68552 4281416 ~ 4284944 (+) True G1511398
TU1729999 other downstream 397154 4610018 ~ 4617952 (+) False G1512020
TU1730000 other downstream 397154 4610018 ~ 4616749 (+) True G1512020
TU1730118 other downstream 653131 4865995 ~ 4868008 (+) True G1512113
TU1729941 other downstream 806396 5019260 ~ 5026330 (+) True LOC110495595

Expression Profile