RNA id: TU1729292


Basic Information

Item Value
RNA id TU1729292
length 467
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G1511458
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4451379 ~ 4451949 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATCACAGACAGTAGGTTTCTACAGGGCAGAACCAGGCATCACAGACAGTGGGTTTCTACAGGGCAGAACCAGGCATCACAGACAGTAGGTTTCTACAGGGCAGAACCAGGCATCACAGACAGTGGGTTTCTACAGGGCAGAACCAGGCATCACAGACAGTAGGTTTCTACAGGGCAGAACCAGGCATCACAGACAGTAGGTTTCTACAGGGCAGAACCAGGCATCACAGACAGTAGGTTTCTAAGGTAAGGCATCACAGACAGTAGGTTTCTAAGGTAAAGCATCACAGACAGTAGGTTTCTAAGGTAAAGCATCACAGACAGTAGGTTTCTAAGGTAAAGCATCACAGACAGTAGGTTTCTAAGGTAAAGCATCACAGACAGTAGGTTTCTACAGGGCAGAACCAGGCATCACAGACAGTAGGTTTCTACAGGGCAGAACCAGGTATCACAGACAGTAGGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1729270 lncRNA upstream 47001 4403564 ~ 4404378 (+) True G1511437
TU1729264 lncRNA upstream 58226 4392614 ~ 4393153 (+) True G1511433
TU1729259 lncRNA upstream 65449 4385316 ~ 4385930 (+) True G1511430
TU1729252 lncRNA upstream 67778 4380982 ~ 4383601 (+) True G1511429
TU1729240 lncRNA upstream 106759 4344022 ~ 4344620 (+) True G1511423
TU1729298 lncRNA downstream 9194 4461143 ~ 4461774 (+) False G1511461
TU1729299 lncRNA downstream 9194 4461143 ~ 4461774 (+) True G1511461
TU1729309 lncRNA downstream 35029 4486978 ~ 4491914 (+) True G1511471
TU1729798 lncRNA downstream 51698 4503647 ~ 4503847 (+) True G1511846
TU1729809 lncRNA downstream 60402 4512351 ~ 4513999 (+) True G1511853
XM_036951395.1 mRNA upstream 1151151 3299441 ~ 3300228 (+) True LOC118941057
XM_036951394.1 mRNA upstream 1236925 3214038 ~ 3214454 (+) True LOC118941056
XM_036951471.1 mRNA upstream 1997609 2377933 ~ 2453770 (+) False tdrd3
XM_036951379.1 mRNA downstream 166139 4618088 ~ 4624857 (+) True LOC118941040
XM_036951124.1 mRNA downstream 202092 4654041 ~ 4686334 (+) False LOC110516278
XM_036951129.1 mRNA downstream 202101 4654050 ~ 4748243 (+) False LOC110516278
XM_036951121.1 mRNA downstream 202117 4654066 ~ 4686334 (+) False LOC110516278
XM_036951122.1 mRNA downstream 202136 4654085 ~ 4723559 (+) False LOC110516278
TU1729203 other upstream 166435 4281416 ~ 4284944 (+) True G1511398
TU1728263 other upstream 1577213 2872394 ~ 2874166 (+) True G1510639
TU1728127 other upstream 1741632 2708713 ~ 2709747 (+) True G1510527
TU1728124 other upstream 1745882 2704842 ~ 2705497 (+) True G1510524
TU1727953 other upstream 1916704 2534312 ~ 2534675 (+) True G1510408
TU1729999 other downstream 158069 4610018 ~ 4617952 (+) False G1512020
TU1730000 other downstream 158069 4610018 ~ 4616749 (+) True G1512020
TU1730118 other downstream 414046 4865995 ~ 4868008 (+) True G1512113
TU1729941 other downstream 567311 5019260 ~ 5026330 (+) True LOC110495595
TU1730195 other downstream 652138 5104087 ~ 5106088 (+) True G1512182

Expression Profile