RNA id: TU1729844


Basic Information

Item Value
RNA id TU1729844
length 405
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G1511871
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4561573 ~ 4564497 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtaaaacaacacctatcatactactatgactgatcctataaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcataccactatgactgaccctgtaaacaacacctatcacactactatgactgaccctgtacaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1729818 lncRNA upstream 45186 4514410 ~ 4516387 (+) True G1511855
TU1729809 lncRNA upstream 47574 4512351 ~ 4513999 (+) True G1511853
TU1729798 lncRNA upstream 57726 4503647 ~ 4503847 (+) True G1511846
TU1729309 lncRNA upstream 69659 4486978 ~ 4491914 (+) True G1511471
TU1729299 lncRNA upstream 99799 4461143 ~ 4461774 (+) True G1511461
TU1729983 lncRNA downstream 10631 4574531 ~ 4601843 (+) True G1512004
TU1729984 lncRNA downstream 22953 4586853 ~ 4637099 (+) True G1512005
TU1730004 lncRNA downstream 50624 4614524 ~ 4615064 (+) True G1512023
TU1730005 lncRNA downstream 51688 4615588 ~ 4616222 (+) True G1512024
TU1730008 lncRNA downstream 64835 4628735 ~ 4629158 (+) False G1512027
XM_036951395.1 mRNA upstream 1261345 3299441 ~ 3300228 (+) True LOC118941057
XM_036951394.1 mRNA upstream 1347119 3214038 ~ 3214454 (+) True LOC118941056
XM_036951471.1 mRNA upstream 2107803 2377933 ~ 2453770 (+) False tdrd3
XM_036951379.1 mRNA downstream 54188 4618088 ~ 4624857 (+) True LOC118941040
XM_036951124.1 mRNA downstream 90141 4654041 ~ 4686334 (+) False LOC110516278
XM_036951129.1 mRNA downstream 90150 4654050 ~ 4748243 (+) False LOC110516278
XM_036951121.1 mRNA downstream 90166 4654066 ~ 4686334 (+) False LOC110516278
XM_036951122.1 mRNA downstream 90185 4654085 ~ 4723559 (+) False LOC110516278
TU1729203 other upstream 276629 4281416 ~ 4284944 (+) True G1511398
TU1728263 other upstream 1687407 2872394 ~ 2874166 (+) True G1510639
TU1728127 other upstream 1851826 2708713 ~ 2709747 (+) True G1510527
TU1728124 other upstream 1856076 2704842 ~ 2705497 (+) True G1510524
TU1727953 other upstream 2026898 2534312 ~ 2534675 (+) True G1510408
TU1729999 other downstream 46118 4610018 ~ 4617952 (+) False G1512020
TU1730000 other downstream 46118 4610018 ~ 4616749 (+) True G1512020
TU1730118 other downstream 302095 4865995 ~ 4868008 (+) True G1512113
TU1729941 other downstream 455360 5019260 ~ 5026330 (+) True LOC110495595
TU1730195 other downstream 540187 5104087 ~ 5106088 (+) True G1512182

Expression Profile