RNA id: TU1730008


Basic Information

Item Value
RNA id TU1730008
length 292
lncRNA type intronic
GC content 0.41
exon number 2
gene id G1512027
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4628735 ~ 4629158 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catatgagatgagtaatgtagggtatgtaaacatataaatgGCATTAGACCAGTATGAGctttaccctggtttcatgtggaatcactccaaCAGCATTATGAGCTTTACCCTGGTTTAAGGTGGAATCACTCCAACAgcattatgaactttaccctggtttAAGGTGGAATCACTCCAACAgcattatgaactttaccctggtttcatgtggaatcactccaaCTATACCACAATGCAGCATGTTTTAGTGAGACAGCCAATGCTAATTCTCTTGGGCTGAGTTCCAAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1730005 lncRNA upstream 12513 4615588 ~ 4616222 (+) True G1512024
TU1730004 lncRNA upstream 13671 4614524 ~ 4615064 (+) True G1512023
TU1729983 lncRNA upstream 26892 4574531 ~ 4601843 (+) True G1512004
TU1729839 lncRNA upstream 64238 4561573 ~ 4564497 (+) False G1511871
TU1729919 lncRNA downstream 44320 4673478 ~ 4682284 (+) True LOC110516278
TU1729953 lncRNA downstream 144986 4774144 ~ 4822072 (+) True G1511974
TU1730068 lncRNA downstream 146418 4775576 ~ 4821454 (+) False G1512080
TU1730070 lncRNA downstream 146418 4775576 ~ 4800409 (+) True G1512080
TU1729951 lncRNA downstream 184254 4813412 ~ 4815949 (+) True G1511972
XM_036951379.1 mRNA upstream 3878 4618088 ~ 4624857 (+) True LOC118941040
XM_036951395.1 mRNA upstream 1328507 3299441 ~ 3300228 (+) True LOC118941057
XM_036951394.1 mRNA upstream 1414281 3214038 ~ 3214454 (+) True LOC118941056
XM_036951471.1 mRNA upstream 2174965 2377933 ~ 2453770 (+) False tdrd3
XM_036951124.1 mRNA downstream 24883 4654041 ~ 4686334 (+) False LOC110516278
XM_036951129.1 mRNA downstream 24892 4654050 ~ 4748243 (+) False LOC110516278
XM_036951121.1 mRNA downstream 24908 4654066 ~ 4686334 (+) False LOC110516278
XM_036951122.1 mRNA downstream 24927 4654085 ~ 4723559 (+) False LOC110516278
XM_036951127.1 mRNA downstream 24928 4654086 ~ 4723559 (+) False LOC110516278
TU1729999 other upstream 10783 4610018 ~ 4617952 (+) False G1512020
TU1730000 other upstream 11986 4610018 ~ 4616749 (+) True G1512020
TU1729203 other upstream 343791 4281416 ~ 4284944 (+) True G1511398
TU1728263 other upstream 1754569 2872394 ~ 2874166 (+) True G1510639
TU1728127 other upstream 1918988 2708713 ~ 2709747 (+) True G1510527
TU1730118 other downstream 236837 4865995 ~ 4868008 (+) True G1512113
TU1729941 other downstream 390102 5019260 ~ 5026330 (+) True LOC110495595
TU1730195 other downstream 474929 5104087 ~ 5106088 (+) True G1512182
TU1730220 other downstream 613576 5242734 ~ 5243427 (+) True G1512205
TU1730336 other downstream 978750 5607908 ~ 5613036 (+) True G1512309

Expression Profile