RNA id: TU1729951


Basic Information

Item Value
RNA id TU1729951
length 1530
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1511972
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4813412 ~ 4815949 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCAGAGCTGGGTCCTGCAGAGAGCacctttcttgtttttcttttatattgacgacgctGTTGCCAGtttaaatattatcgattatttaggctaaaaacaacctgaggattgattataaacatcgttttacatgtttctacaaactttacggatactatttggaattttcgtctgcctctTGTGACCGCATTTGAGCTATTGGATTACAGAACTAAATGTGCCAACAAAATGGAGGTTTCaagatataaagagggactttatcaaacaaaatgaacatttattgtgtaactgggagtgttgtgagtgcaaccatatgaagatcatcataTTTTGGACTTTCGTGACTAGTCTTCTTGGCTGGTAACTgtatgtaatgttttgtgtgctgagcgccgtcctcagataatcgcatggtttgctttcgccttaaagcctttttgaaatctgacatggcggctagattaacaacaagtttagctttattttaatgtattacacttgtgatttcatgaaatgtaaatatttatagtaattaaATTTGAATTGgtcactctgcaatttcaccggatgttgaccAGGTGGGACGCAACCGTCCCAGGTACCCACATGAAGTTAAtgtatacgttggtgtgtttttaagtTGCCCTGGtgagagaaactcttcccacaatcagagcagacgtaaggcttctctcctgtgtgtgttctctgatgtacttttagctcatttgatgtttcaaagcattttccacagtcagagcaggaataaGGCTTCGCTCCTGTGTGTATACTTTGGTGTGCTTTTAAGGTGCCCAGCTGACAGAAACtcgccccacagtcagagcagacgtaaggcttctctcctgtgtgtgttctctggtgaacctTTAAATGACCTAATGTtttgaagcattttccacagtcagagcagacgtaaggcttctctcctgtgtgtgttctctggtgaacctTTATATGACCTAATGTtttgaagcattttccacagtcagagcagacgtaaggcttctctcctgtgtgtgttctctggtgaacctTTAAATGACCTAATGTtttgaagcattttccacagtcagagcagaagaaaggcttctctcctgtgtgtgttctctgatgaacttttagctcatttgatgttttaaaacattttccacagtcagagcaggaataaggcttcgctcctgtgtgtatacgttggtgtgtttttaagtTGCTATGGtgagagaaactcttcccacagtcagaacagaagtaaggcttctctcctgtgtgtgttctctggtgaacttttagctcatttgatgttttaaatttttttccacagtcagagcaggaataaGGCTTCGCTCCTGTGTGTATATGTTGGTGTGTTTTTAAGTTGCACAGCTGAGAGAAACTtgccccacagtcagagcaggagtatggcttctctcctgtgtgtgttctctgatgaacttttagcaccgttgatgttttgaagcatttcccacagtcagagcaggagtaaggct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1730070 lncRNA upstream 13003 4775576 ~ 4800409 (+) True G1512080
TU1729919 lncRNA upstream 131128 4673478 ~ 4682284 (+) True LOC110516278
TU1730008 lncRNA upstream 184254 4628735 ~ 4629158 (+) False G1512027
TU1730009 lncRNA upstream 184254 4628735 ~ 4629158 (+) False G1512027
TU1730010 lncRNA upstream 184254 4628735 ~ 4629158 (+) True G1512027
TU1730094 lncRNA downstream 8388 4824337 ~ 4859103 (+) True G1512095
TU1730111 lncRNA downstream 38765 4854714 ~ 4919978 (+) False G1512107
TU1730112 lncRNA downstream 38765 4854714 ~ 4919978 (+) True G1512107
TU1730124 lncRNA downstream 60926 4876875 ~ 4877167 (+) True G1512118
TU1729908 lncRNA downstream 64824 4880773 ~ 4933600 (+) True LOC110528775
XM_036951129.1 mRNA upstream 65169 4654050 ~ 4748243 (+) False LOC110516278
XM_036951118.1 mRNA upstream 70631 4709546 ~ 4742781 (+) False LOC110516278
XM_036951119.1 mRNA upstream 70631 4709860 ~ 4742781 (+) False LOC110516278
XM_036951120.1 mRNA upstream 70631 4711622 ~ 4742781 (+) False LOC110516278
XM_036951123.1 mRNA upstream 70631 4733091 ~ 4742781 (+) False LOC110516278
LOC110528775 mRNA downstream 64719 4880668 ~ 4890985 (+) False LOC110528775
XM_036951092.1 mRNA downstream 79965 4895914 ~ 4925625 (+) False LOC110495595
XM_036951094.1 mRNA downstream 79965 4895914 ~ 5043592 (+) False LOC110495595
XM_036951095.1 mRNA downstream 117306 4933255 ~ 5043592 (+) False LOC110495595
XM_036951097.1 mRNA downstream 117317 4933266 ~ 5043592 (+) False LOC110495595
TU1729999 other upstream 195460 4610018 ~ 4617952 (+) False G1512020
TU1730000 other upstream 196663 4610018 ~ 4616749 (+) True G1512020
TU1729203 other upstream 528468 4281416 ~ 4284944 (+) True G1511398
TU1728263 other upstream 1939246 2872394 ~ 2874166 (+) True G1510639
TU1728127 other upstream 2103665 2708713 ~ 2709747 (+) True G1510527
TU1730118 other downstream 50046 4865995 ~ 4868008 (+) True G1512113
TU1729941 other downstream 203311 5019260 ~ 5026330 (+) True LOC110495595
TU1730195 other downstream 288138 5104087 ~ 5106088 (+) True G1512182
TU1730220 other downstream 426785 5242734 ~ 5243427 (+) True G1512205
TU1730336 other downstream 791959 5607908 ~ 5613036 (+) True G1512309

Expression Profile