RNA id: TU1730112


Basic Information

Item Value
RNA id TU1730112
length 1237
lncRNA type read_through
GC content 0.37
exon number 3
gene id G1512107
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4854714 ~ 4919978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgtccattaaaataacatcaaattgatcagaaatacagtatcgacattgttattgttgtaaatgactattgtagctggaaacggcagatattttatggaatatctacataggtgtacagaggcccattatcagcaactatcactcctgtgttccaatggcatgttgtgttagctaatccaagtttatcattttaaaaggctaattgatcattacaaaacccttttgcaattatgttagcacagctgaaaactgtggtgcggattaaagaagcaataataaCATtccttttttagactagttgagtatctgggtcATTTgtcggttcgattacaggctcaaaatggccagaaacaaagacctttcttctgaaagtcgtcagtctattcttgttctgagaaatgaaggctattccatgtgagaaatttccaagaaactgaagatctcgtgcagttctgtgtaccactcccttcacagaacagtgcaaactggctctaaccagaatagcaCAACtgggcaagaggacaagtattttagagtgtctagtttgagaaacagacgtctcacaagtcctcaactggcagcttcattaaatagtacccgcaaaacaccaatctcaatgtcaacagtgaagaggcgactccgggatgctggccttctagacactattctggttagagactgtttgctctgttctgtgaagagagtagtacacagcattgtatgagatcttcagccgtttccagctacaatagtcatttacaacattaacgatgtctacactgtatttctgatcacttTGATTGGACAAAAAACGTgctattctttcaaaaacatggacatttgtAACTTTAGAATGTATTCATTTATTTCACCACTAATCgtagtgtatttaaaaaaaaaaaatgtttaacctttatttaactttctTAGCATACTGGTTATTGTCCGGAATTTCCGatgactgacatgcccaaagtaaactgcccagaagctaggatatgcatatacttgatagcattggatagaaaacagttTCTAaagctgttaaaataatgtctgtgggtataacagaactgatatgccTTGAGAAAAATCCATCTGGAATATTTCTTTTTTGAGGTCACCGGTTTTTTCAATGCTTGCCTATGGGATTTTCAAATagataggacccagattgcagttcctatggcttccactagatgtcaacagtctttagaaagggtttcatgcttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1729953 lncRNA upstream 32642 4774144 ~ 4822072 (+) True G1511974
TU1730068 lncRNA upstream 33260 4775576 ~ 4821454 (+) False G1512080
TU1729951 lncRNA upstream 38765 4813412 ~ 4815949 (+) True G1511972
TU1730070 lncRNA upstream 54305 4775576 ~ 4800409 (+) True G1512080
TU1729919 lncRNA upstream 172430 4673478 ~ 4682284 (+) True LOC110516278
TU1729950 lncRNA downstream 24963 4944941 ~ 5000801 (+) True LOC118941222
TU1730137 lncRNA downstream 31006 4950984 ~ 4952108 (+) True G1512130
TU1729965 lncRNA downstream 94996 5014974 ~ 5016642 (+) False LOC110495595
TU1730177 lncRNA downstream 155759 5075737 ~ 5176509 (+) True G1512167
TU1730180 lncRNA downstream 160670 5080648 ~ 5172352 (+) True G1512168
XM_036951129.1 mRNA upstream 106471 4654050 ~ 4748243 (+) False LOC110516278
XM_036951118.1 mRNA upstream 111933 4709546 ~ 4742781 (+) False LOC110516278
XM_036951119.1 mRNA upstream 111933 4709860 ~ 4742781 (+) False LOC110516278
XM_036951120.1 mRNA upstream 111933 4711622 ~ 4742781 (+) False LOC110516278
XM_036951123.1 mRNA upstream 111933 4733091 ~ 4742781 (+) False LOC110516278
XM_036951095.1 mRNA downstream 13277 4933255 ~ 5043592 (+) False LOC110495595
XM_036951097.1 mRNA downstream 13288 4933266 ~ 5043592 (+) False LOC110495595
XM_036951096.1 mRNA downstream 13293 4933271 ~ 5043592 (+) False LOC110495595
XM_036951098.1 mRNA downstream 13640 4933618 ~ 5043592 (+) False LOC110495595
XR_005037303.1 mRNA downstream 13664 4933642 ~ 4942908 (+) False LOC110495595
TU1729999 other upstream 236762 4610018 ~ 4617952 (+) False G1512020
TU1730000 other upstream 237965 4610018 ~ 4616749 (+) True G1512020
TU1729203 other upstream 569770 4281416 ~ 4284944 (+) True G1511398
TU1728263 other upstream 1980548 2872394 ~ 2874166 (+) True G1510639
TU1728127 other upstream 2144967 2708713 ~ 2709747 (+) True G1510527
TU1729941 other downstream 99282 5019260 ~ 5026330 (+) True LOC110495595
TU1730195 other downstream 184109 5104087 ~ 5106088 (+) True G1512182
TU1730220 other downstream 322756 5242734 ~ 5243427 (+) True G1512205
TU1730336 other downstream 687930 5607908 ~ 5613036 (+) True G1512309
TU1729877 other downstream 743990 5663968 ~ 5671333 (+) True LOC110513970