RNA id: TU1730456


Basic Information

Item Value
RNA id TU1730456
length 2734
lncRNA type antisense_over
GC content 0.50
exon number 11
gene id G1512419
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6096880 ~ 6114769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGTTTCAGATGTCTTTTATTGACCTTAGCAAGACGCATAATAGAAAAATGATCAAAACATTCTCTACAAAAATAAAAAGATCAACTCGCTACAATGGATGAACACGATCTGATGGGAGGAGCTAAACGATATTACACACCAGGTCAACACGATctcatgggaggagaggggaggagctaAACGATATTACACACCAGGTCAACACGATctcatgggaggagaggggaggagctaAACAATATTACACACCAGTTCAACACGATctcatgggaggagaggggaggagctaAACGATATTACACACCAGTTCAACACATCCATCATGAAACAACCTTAACCTTGTTCTGTTCCTCAGTCCGACAGCGTCCACAACCTTTTGTTTAGAAACGCAGTAAAACCACAAAAcacacaatccccccccccccccacaaggaCTTTCAAATGTTCCTGTGACCTACAAGATCATCCGCTCAGTATTTCTgaccagagaggaggaggtgttagaCATTCAAGTTTCCCTTTTTGTTCCCTCACAGGAGTCTTCAGACCTCCCTAGGTGACGTCGTAGAAAAGATGGCGGTCCtgaaggaaaggagatgaggaaggAAGGGAAGCTTGTTGAGTCCATCACAAAAAACGTGCTTCTAGGAAAGACCCACTCTTCCATAAGAGTTGAATACTATATAATTTAATATCGGATTAATttaatttacacaaaaaaactgcAATTGAAAAAAATAAACTCTTTAAATTCCGTTTAAAGCGAGAATCCACCCAAGTCAAACATAATATCAGAACTAAAAGGGTATACTGAGCCAGCTGCAGTAGAGATgggctagagacagagagacgaggggGAAGGTAGGTTTGACCAGGCACTCGTCTGTTAGTAGGTAGCAGAGGATGATGAGTTACTATGAATAactatacacagacagacagacagacagacaagacagacaagacagacagacacacagacacactgcagaGAGGGCCTGGTTTGTACATGGTCCAGTCAGTCATTAGTAGCAGTGGTTGGCTGAGCGTCCGGCTCTCTGCAGTCTGCCTGAAAAGACTCCCTATATTGTGTACTAAGTTTGACCAGAATCCACATagacctctggtcaaaagtagtgcactatatagggaatagggtgctgtttgatACACATATGGTTGTGTGTCGGTGTTCTCAGATGGTCTGGTATCCAGCATGGCTCCTCTTCCTGCCGATGAGGTAAGCGATGAGAACGATGAGAACCAGGCCGGCCAGAGCAGCTCCCACGACGATGGGAATCAACATGCTGTCCTGATCCAACTGACACTCCTCcgCTTGTGCAAACTGTCCTCTGGTGATGCCGAAGGGCTGGACCTGCAGGTGGAAGGTGTTGAGGGAGAAGTTCTGGTCTACAGACAGAGTCTGTTCTGAACTACACATGTAGCTACGCCCCAGGGAGCCACGCAGGTAGTCCAGACTACTGTTACTGGTGTTGAAcggggCTGTCATATCAGACCAAGCTGCTACCACAGACAGACCAGTCAGGTGGTACCTGTTAGACGTGGTGTTCAGAGTAAACAGGAAGCTGAGGTTGGTGGCACTGCCCTGTGTCAGCACCAGGGTGGCGCTGGTGGGGTCACATGATCCTGAGCTGGTCGTCTGATTGGGCTGCAGGTTTACTACTTCCTGGATAGTcTTATTCTGTGAGGCAGAGAAGTGGGAGATGTTGAGCTGCAGTGCCATGCGGGCCAGCAGACAGACGGTCCCGTTGCTATTGGAGACAGAGTAGCTGCCCTGGTTAGGGGTTCCAGGGGGGGTGGGGACGGGGGCGggggctgctgtggtggtggaggggggtggaggcggggctgtggtggtggagggggatggaggcGGGGCTGTGGTGAAGCTCTGGTCAGCAGTACACACACTCTCGTTGGGGCTCAGATCGTCTCCCGTCATGTAGGCCTCCATCGTGACGTTTGAGAAGGTGACGGTGGCTCCTCCCACAATGACAGGTGAGGCGCTGATACATCTGTAGGTGGTGTTGACCCTAGCAACCATCCCTACAGAGGTCGTCTCCACAGTTACCACATcagtgCTGTTGGCCTCTGGGAAGGTAGATACATCACTGAGGTTGTACTGCAGGGTAAGGTTAGCGACGCTGTACAGACTGACATTGGATGAGAAGCTGAGGCCCAGGGCGTGGCCATCCCCGAACAACGCCACGAGCGAGGGGGAGCGGCCGTCACCCCCACACGAGCTGGCCACACCCACCACCGCCGAACCTGGGAGGGGCACCATCACCGTACGCGTGCCGTTGGCTGTGTTATAGGTGATGGAGAAAGAGGCGGAGAGTTCGGCTTTTATACAGGTGGAGTTTCCCTCGGTCACCTTCAGAGTGACCTGAGACTGGACTACAGTCACACAACCAAGAATCGCAAAGCAGGCGATCCCGACAAGGAATGGACATGTTCGAGTCATGTTTCAAGTCCAGAGTTCAGTTTAATGGATAGCACACACCGCTTGTCCAAAGCAGCTGTGAAGGCAGTGCAACAACAACCCCGAAAAGTAAAAATCGACCTTCCTTTTCCTGTTATTCTGTCCCCTTTTATATGGCGGTTATTTAATATTTTTTCATATTCTTGGTCCTGTTTTCGGAGCAGGTTGCAGAAGTCAGACAGTATCGCTCCCTTTCATGTCCTTAATACCAGGAGGGAACGTCCAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1730540 lncRNA upstream 9048 6086880 ~ 6087832 (+) True G1512479
TU1730539 lncRNA upstream 10859 6085737 ~ 6086021 (+) True G1512478
TU1730521 lncRNA upstream 70493 6025656 ~ 6026387 (+) True G1512468
TU1730512 lncRNA upstream 82520 6012170 ~ 6014360 (+) False G1512463
TU1730549 lncRNA downstream 1005 6115774 ~ 6116068 (+) True G1512486
TU1730551 lncRNA downstream 2148 6116917 ~ 6117222 (+) True G1512488
TU1730469 lncRNA downstream 6859 6121628 ~ 6122179 (+) True G1512426
TU1730560 lncRNA downstream 35877 6150646 ~ 6153281 (+) True LOC118941019
TU1730563 lncRNA downstream 44365 6159134 ~ 6159378 (+) True G1512499
XM_036951291.1 mRNA upstream 279 6082293 ~ 6096601 (+) True LOC110527156
XM_036951089.1 mRNA upstream 14697 6070774 ~ 6082183 (+) False LOC110511044
XM_036951090.1 mRNA upstream 14697 6071605 ~ 6082183 (+) False LOC110511044
XM_036951091.1 mRNA upstream 14697 6071605 ~ 6082183 (+) True LOC110511044
XM_036951287.1 mRNA upstream 31691 6050479 ~ 6065189 (+) False LOC118941024
XM_036951131.1 mRNA downstream 31897 6146666 ~ 6157976 (+) False LOC118941019
XM_036951132.1 mRNA downstream 31897 6146666 ~ 6157976 (+) False LOC118941019
XM_036951130.1 mRNA downstream 31898 6146667 ~ 6157976 (+) False LOC118941019
XM_036951108.1 mRNA downstream 58054 6172823 ~ 6188926 (+) False LOC110518779
XM_021560766.2 mRNA downstream 86616 6201385 ~ 6203248 (+) False mzt1
TU1729877 other upstream 425547 5663968 ~ 5671333 (+) True LOC110513970
TU1730336 other upstream 483844 5607908 ~ 5613036 (+) True G1512309
TU1730220 other upstream 853453 5242734 ~ 5243427 (+) True G1512205
TU1730195 other upstream 990792 5104087 ~ 5106088 (+) True G1512182
TU1729941 other upstream 1070550 5019260 ~ 5026330 (+) True LOC110495595
TU1730480 other downstream 63071 6177840 ~ 6179111 (+) True LOC110518779
TU1731419 other downstream 283994 6398763 ~ 6402914 (+) False LOC110495361
TU1731415 other downstream 287304 6402073 ~ 6402914 (+) False LOC110495361
TU1731437 other downstream 326083 6440852 ~ 6459569 (+) True LOC110496964
TU1731526 other downstream 435876 6550645 ~ 6570479 (+) True LOC110514219

Expression Profile