RNA id: TU1731455


Basic Information

Item Value
RNA id TU1731455
length 219
lncRNA type intronic
GC content 0.48
exon number 2
gene id G1513211
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6425551 ~ 6426843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatgtggttgtcccccctcactatgactgagatgtggttgtcccacctcactatgactgagatgtggttgtcccaactcactatgactgagatgtggttgtcccaactcactatgactgagatgtggttgtcccaactcactatgactgagatgtggttgtccctcactatgactgagatgttgttgtccctcactatgactgagatgttgttgtccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1731448 lncRNA upstream 15155 6409964 ~ 6410396 (+) True G1513205
TU1731446 lncRNA upstream 17691 6407412 ~ 6407860 (+) True G1513204
TU1731421 lncRNA upstream 22034 6403245 ~ 6403517 (+) True LOC110495361
TU1731420 lncRNA upstream 22081 6403245 ~ 6403470 (+) False LOC110495361
TU1731408 lncRNA upstream 31448 6393699 ~ 6394103 (+) True G1513183
TU1731442 lncRNA downstream 35106 6461949 ~ 6462786 (+) True G1513200
TU1731439 lncRNA downstream 37439 6464282 ~ 6464972 (+) True G1513197
TU1731462 lncRNA downstream 39436 6466279 ~ 6466580 (+) True G1513218
TU1731443 lncRNA downstream 40946 6467789 ~ 6468089 (+) True G1513201
TU1731441 lncRNA downstream 41318 6468161 ~ 6468432 (+) True G1513199
XM_036951486.1 mRNA upstream 22034 6400148 ~ 6403517 (+) False LOC110495361
XR_005037351.1 mRNA upstream 41137 6351918 ~ 6384414 (+) True LOC110512784
XR_005037352.1 mRNA upstream 51407 6351916 ~ 6374144 (+) False LOC110512784
XM_036951481.1 mRNA upstream 51407 6351918 ~ 6374144 (+) False LOC110512784
XM_036951482.1 mRNA upstream 53234 6351916 ~ 6372317 (+) False LOC110512784
XM_036951553.1 mRNA downstream 63388 6490231 ~ 6491752 (+) False LOC118941080
XM_036951554.1 mRNA downstream 63747 6490590 ~ 6491752 (+) True LOC118941080
XM_036951489.1 mRNA downstream 66560 6493403 ~ 6573608 (+) False LOC110514219
XM_036951490.1 mRNA downstream 66560 6493403 ~ 6573608 (+) False LOC110514219
XM_036951491.1 mRNA downstream 66560 6493403 ~ 6573608 (+) False LOC110514219
TU1731419 other upstream 22637 6398763 ~ 6402914 (+) False LOC110495361
TU1731415 other upstream 22637 6402073 ~ 6402914 (+) False LOC110495361
TU1730480 other upstream 246440 6177840 ~ 6179111 (+) True LOC110518779
TU1729877 other upstream 754218 5663968 ~ 5671333 (+) True LOC110513970
TU1730336 other upstream 812515 5607908 ~ 5613036 (+) True G1512309
TU1731437 other downstream 14009 6440852 ~ 6459569 (+) True LOC110496964
TU1731526 other downstream 123802 6550645 ~ 6570479 (+) True LOC110514219
TU1731618 other downstream 281816 6708659 ~ 6710048 (+) True LOC110516612
TU1731792 other downstream 599365 7026208 ~ 7026810 (+) True G1513452
TU1731799 other downstream 605767 7032610 ~ 7085719 (+) False LOC110513752

Expression Profile