RNA id: TU1731441


Basic Information

Item Value
RNA id TU1731441
length 272
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1513199
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6468161 ~ 6468432 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAATGACTCTGGGAAGATGTAAAGCTGTTTATAAATGACTCTGGGAAGATGTAAAGCTGTTTATAAATGACTCTGGGAAGATGTAAAGCTGTTTATAAATGACTCTGGGAAGACGTAAAGCTGTATATAAATGACTCTGGGAAGATGTAAAGCTGTTTATAAATGACTCTGGGAAGATGTAAAGCTGTTTATAAATGACTCTGGGAAGATGTAAAGCTGTTTATAAATGACTCTGGGAAGATGTAAAGCTGTTTATAAATGACTCTGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1731443 lncRNA upstream 72 6467789 ~ 6468089 (+) True G1513201
TU1731462 lncRNA upstream 1581 6466279 ~ 6466580 (+) True G1513218
TU1731439 lncRNA upstream 3189 6464282 ~ 6464972 (+) True G1513197
TU1731442 lncRNA upstream 5375 6461949 ~ 6462786 (+) True G1513200
TU1731455 lncRNA upstream 41318 6425551 ~ 6426843 (+) True G1513211
TU1731516 lncRNA downstream 23859 6492291 ~ 6492721 (+) True G1513253
TU1731536 lncRNA downstream 35995 6504427 ~ 6504686 (+) False G1513263
TU1731535 lncRNA downstream 36015 6504447 ~ 6504875 (+) True G1513263
TU1731528 lncRNA downstream 62094 6530526 ~ 6530808 (+) True G1513257
TU1731539 lncRNA downstream 62491 6530923 ~ 6531493 (+) False G1513266
XR_005037353.1 mRNA upstream 8230 6404433 ~ 6459931 (+) False LOC110496964
XM_036951488.1 mRNA upstream 8363 6404433 ~ 6459798 (+) False LOC110496964
XM_036951486.1 mRNA upstream 64644 6400148 ~ 6403517 (+) False LOC110495361
XR_005037351.1 mRNA upstream 83747 6351918 ~ 6384414 (+) True LOC110512784
XM_036951481.1 mRNA upstream 94017 6351918 ~ 6374144 (+) False LOC110512784
XM_036951553.1 mRNA downstream 21799 6490231 ~ 6491752 (+) False LOC118941080
XM_036951554.1 mRNA downstream 22158 6490590 ~ 6491752 (+) True LOC118941080
XM_036951489.1 mRNA downstream 24971 6493403 ~ 6573608 (+) False LOC110514219
XM_036951490.1 mRNA downstream 24971 6493403 ~ 6573608 (+) False LOC110514219
XM_036951491.1 mRNA downstream 24971 6493403 ~ 6573608 (+) False LOC110514219
TU1731437 other upstream 8592 6440852 ~ 6459569 (+) True LOC110496964
TU1731419 other upstream 65247 6398763 ~ 6402914 (+) False LOC110495361
TU1731415 other upstream 65247 6402073 ~ 6402914 (+) False LOC110495361
TU1730480 other upstream 289050 6177840 ~ 6179111 (+) True LOC110518779
TU1729877 other upstream 796828 5663968 ~ 5671333 (+) True LOC110513970
TU1731526 other downstream 82213 6550645 ~ 6570479 (+) True LOC110514219
TU1731618 other downstream 240227 6708659 ~ 6710048 (+) True LOC110516612
TU1731792 other downstream 557776 7026208 ~ 7026810 (+) True G1513452
TU1731799 other downstream 564178 7032610 ~ 7085719 (+) False LOC110513752
TU1731797 other downstream 620400 7088832 ~ 7097160 (+) True LOC110513752

Expression Profile