RNA id: TU1731528


Basic Information

Item Value
RNA id TU1731528
length 234
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1513257
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6530526 ~ 6530808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGTAAGGACTGTGTTAATGAGGTATTCTCCTCTGTGTTGCTGTAAGGACTGTGTTAATGAGGTATActcctctctacatcccccaTGTTGCTGTAAGGACTGTGTTAATGAGGTATACTCCTCTCTACACCCCCCATGTTGCTGTAAGGACTGTGTTAATGAGGTATActcctctctacatcccccaTGTTGCTGTAAGGACTGTGTTAATGAGGTATACTCCTCTCTACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1731535 lncRNA upstream 25651 6504447 ~ 6504875 (+) True G1513263
TU1731536 lncRNA upstream 25840 6504427 ~ 6504686 (+) False G1513263
TU1731516 lncRNA upstream 37805 6492291 ~ 6492721 (+) True G1513253
TU1731441 lncRNA upstream 62094 6468161 ~ 6468432 (+) True G1513199
TU1731443 lncRNA upstream 62437 6467789 ~ 6468089 (+) True G1513201
TU1731539 lncRNA downstream 115 6530923 ~ 6531493 (+) False G1513266
TU1731540 lncRNA downstream 115 6530923 ~ 6532332 (+) False G1513266
TU1731541 lncRNA downstream 115 6530923 ~ 6532332 (+) True G1513266
TU1731548 lncRNA downstream 13865 6544673 ~ 6546166 (+) True G1513273
TU1731553 lncRNA downstream 32211 6563019 ~ 6563520 (+) True G1513277
XM_036951553.1 mRNA upstream 38774 6490231 ~ 6491752 (+) False LOC118941080
XM_036951554.1 mRNA upstream 38774 6490590 ~ 6491752 (+) True LOC118941080
XR_005037353.1 mRNA upstream 70595 6404433 ~ 6459931 (+) False LOC110496964
XM_036951488.1 mRNA upstream 70728 6404433 ~ 6459798 (+) False LOC110496964
XM_036951486.1 mRNA upstream 127009 6400148 ~ 6403517 (+) False LOC110495361
XM_036951555.1 mRNA downstream 174824 6705632 ~ 6710286 (+) False LOC110516612
XM_036951031.1 mRNA downstream 276471 6807279 ~ 6815311 (+) False syap1
NM_001160536.2 mRNA downstream 277117 6807925 ~ 6815407 (+) True syap1
XM_036951536.1 mRNA downstream 284678 6815486 ~ 6837266 (+) False LOC110495421
XM_036951537.1 mRNA downstream 284678 6815486 ~ 6837266 (+) False LOC110495421
TU1731437 other upstream 70957 6440852 ~ 6459569 (+) True LOC110496964
TU1731419 other upstream 127612 6398763 ~ 6402914 (+) False LOC110495361
TU1731415 other upstream 127612 6402073 ~ 6402914 (+) False LOC110495361
TU1730480 other upstream 351415 6177840 ~ 6179111 (+) True LOC110518779
TU1729877 other upstream 859193 5663968 ~ 5671333 (+) True LOC110513970
TU1731526 other downstream 19837 6550645 ~ 6570479 (+) True LOC110514219
TU1731618 other downstream 177851 6708659 ~ 6710048 (+) True LOC110516612
TU1731792 other downstream 495400 7026208 ~ 7026810 (+) True G1513452
TU1731799 other downstream 501802 7032610 ~ 7085719 (+) False LOC110513752
TU1731797 other downstream 558024 7088832 ~ 7097160 (+) True LOC110513752

Expression Profile