RNA id: TU1731548


Basic Information

Item Value
RNA id TU1731548
length 520
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1513273
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6544673 ~ 6546166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACAGGTGTAGGTGTATCTAATGGGTTGTTGTAAAAGGTGTTGTTATGGACCATGTAGGACTCCAAACTGCAGACACAGGTGTAGGTGTATCTAATGGGTTGCTGTAAAAGGTGTTGTTATGGACCATGTAGGGCTCCAAACTGCAGACACAGGTGTAGGTGTATCTAATGGGTTGTTGTAAAAGGTGTTGTTATGGACCATGTAGGGCTCCAAACTGCAGACACAGGTGTAGGTGTATCTAATGGGTTGCTGTAAAAGGTGTTGTTATGGATCATGTCAATAAGGCTGCCAACATTTCACTTCATAAGAATCATAATCATCTCTGGCATTTAGcattttatccaaagtgacttacaggcatgaactctgtctctcactctctctctcactctgtctctcactctgtctctcactctgtctctcactctgtctctcactctgtctctcactctgtctctcactctgtctctcactctgtctctcactctgtctctctctctgtctctctctctgtctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1731540 lncRNA upstream 12341 6530923 ~ 6532332 (+) False G1513266
TU1731541 lncRNA upstream 12341 6530923 ~ 6532332 (+) True G1513266
TU1731539 lncRNA upstream 13180 6530923 ~ 6531493 (+) False G1513266
TU1731528 lncRNA upstream 13865 6530526 ~ 6530808 (+) True G1513257
TU1731535 lncRNA upstream 39798 6504447 ~ 6504875 (+) True G1513263
TU1731553 lncRNA downstream 16853 6563019 ~ 6563520 (+) True G1513277
TU1731620 lncRNA downstream 164736 6710902 ~ 6712100 (+) False G1513329
TU1731621 lncRNA downstream 164736 6710902 ~ 6712100 (+) False G1513329
TU1731622 lncRNA downstream 164736 6710902 ~ 6711635 (+) False G1513329
TU1731623 lncRNA downstream 164736 6710902 ~ 6712240 (+) True G1513329
XM_036951553.1 mRNA upstream 52921 6490231 ~ 6491752 (+) False LOC118941080
XM_036951554.1 mRNA upstream 52921 6490590 ~ 6491752 (+) True LOC118941080
XR_005037353.1 mRNA upstream 84742 6404433 ~ 6459931 (+) False LOC110496964
XM_036951488.1 mRNA upstream 84875 6404433 ~ 6459798 (+) False LOC110496964
XM_036951486.1 mRNA upstream 141156 6400148 ~ 6403517 (+) False LOC110495361
XM_036951555.1 mRNA downstream 159466 6705632 ~ 6710286 (+) False LOC110516612
XM_036951031.1 mRNA downstream 261113 6807279 ~ 6815311 (+) False syap1
NM_001160536.2 mRNA downstream 261759 6807925 ~ 6815407 (+) True syap1
XM_036951536.1 mRNA downstream 269320 6815486 ~ 6837266 (+) False LOC110495421
XM_036951537.1 mRNA downstream 269320 6815486 ~ 6837266 (+) False LOC110495421
TU1731437 other upstream 85104 6440852 ~ 6459569 (+) True LOC110496964
TU1731419 other upstream 141759 6398763 ~ 6402914 (+) False LOC110495361
TU1731415 other upstream 141759 6402073 ~ 6402914 (+) False LOC110495361
TU1730480 other upstream 365562 6177840 ~ 6179111 (+) True LOC110518779
TU1729877 other upstream 873340 5663968 ~ 5671333 (+) True LOC110513970
TU1731526 other downstream 4479 6550645 ~ 6570479 (+) True LOC110514219
TU1731618 other downstream 162493 6708659 ~ 6710048 (+) True LOC110516612
TU1731792 other downstream 480042 7026208 ~ 7026810 (+) True G1513452
TU1731799 other downstream 486444 7032610 ~ 7085719 (+) False LOC110513752
TU1731797 other downstream 542666 7088832 ~ 7097160 (+) True LOC110513752

Expression Profile