RNA id: TU1731620


Basic Information

Item Value
RNA id TU1731620
length 452
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G1513329
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6710902 ~ 6712240 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACAGGAtaacagtactgtagtgtaaaccaGGCCATACAGGGTAACAGTACTGTGGTGTAAACCACAGGCCATACAGGgtaacagtactgtagtgtaaaccaGGCCATACAGGgtaacagtactgtagtgtaaaccacaGGCCATACAGGGTAACAGTACTGTGGTGTAATCCACAGGCCATACAGGgtaacagtactgtagtgtaaaccacaGGCCATACAGGgtaacagtactgtagtgtaaaccaGGCCATACAGGgtaacagtactgtagtgtaaaccaGGCCATACAGGgtaacagtactgtagtgtaaacAGGGCCATACAGGGTAACAGTACTGTGGTATAAACCACAGGCCATACAGGgtaacagtactgtagtgtaaacAGGGCCATACAGAgtaacagtactgtagtgtaaacAGGGCCATACAGGgtaacagtactgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1731553 lncRNA upstream 147382 6563019 ~ 6563520 (+) True G1513277
TU1731548 lncRNA upstream 164736 6544673 ~ 6546166 (+) True G1513273
TU1731540 lncRNA upstream 178570 6530923 ~ 6532332 (+) False G1513266
TU1731541 lncRNA upstream 178570 6530923 ~ 6532332 (+) True G1513266
TU1731539 lncRNA upstream 179409 6530923 ~ 6531493 (+) False G1513266
TU1731624 lncRNA downstream 280 6712380 ~ 6712819 (+) True G1513330
TU1731626 lncRNA downstream 1714 6713814 ~ 6714391 (+) False G1513331
TU1731627 lncRNA downstream 1714 6713814 ~ 6714671 (+) False G1513331
TU1731628 lncRNA downstream 1714 6713814 ~ 6714391 (+) False G1513331
TU1731629 lncRNA downstream 1714 6713814 ~ 6714391 (+) True G1513331
XM_036951555.1 mRNA upstream 616 6705632 ~ 6710286 (+) False LOC110516612
XM_036951489.1 mRNA upstream 137294 6493403 ~ 6573608 (+) False LOC110514219
XM_036951490.1 mRNA upstream 137294 6493403 ~ 6573608 (+) False LOC110514219
XM_036951491.1 mRNA upstream 137294 6493403 ~ 6573608 (+) False LOC110514219
XM_036951492.1 mRNA upstream 137294 6493403 ~ 6573608 (+) False LOC110514219
XM_036951031.1 mRNA downstream 95179 6807279 ~ 6815311 (+) False syap1
NM_001160536.2 mRNA downstream 95825 6807925 ~ 6815407 (+) True syap1
XM_036951536.1 mRNA downstream 103386 6815486 ~ 6837266 (+) False LOC110495421
XM_036951537.1 mRNA downstream 103386 6815486 ~ 6837266 (+) False LOC110495421
XM_036951539.1 mRNA downstream 103632 6815732 ~ 6837266 (+) False LOC110495421
TU1731618 other upstream 854 6708659 ~ 6710048 (+) True LOC110516612
TU1731526 other upstream 140423 6550645 ~ 6570479 (+) True LOC110514219
TU1731437 other upstream 251333 6440852 ~ 6459569 (+) True LOC110496964
TU1731419 other upstream 307988 6398763 ~ 6402914 (+) False LOC110495361
TU1731415 other upstream 307988 6402073 ~ 6402914 (+) False LOC110495361
TU1731792 other downstream 314108 7026208 ~ 7026810 (+) True G1513452
TU1731799 other downstream 320510 7032610 ~ 7085719 (+) False LOC110513752
TU1731797 other downstream 376732 7088832 ~ 7097160 (+) True LOC110513752
TU1732350 other downstream 714483 7426583 ~ 7426971 (+) True G1513874
TU1732416 other downstream 908196 7620296 ~ 7621941 (+) True G1513922

Expression Profile