RNA id: TU1731671


Basic Information

Item Value
RNA id TU1731671
length 388
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G1513359
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6778127 ~ 6778607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCCATCCATTGCAAACATATTTTGAAATTCAGTTATTTGCGTAATTATAATTGAGAATCGCAAAACTTTGAAAAATCGATCTAGTACTCAAGTTCAACATAACATAAACATCGACTTACTTCTGGAGACAGTGTGAGCCACTCCTTCGCCGTAAACACAACTTTAGCTCAGGATTTCCGCTTCATCGGGATTTCCACATTGTACCCGGAACTTTTAAATTATATGCATACAATCAAGAGTGCAATTTGATGTTTTATCAATCTGCCATCCCTCTATAACTTACGTTTCTGTCCAAATCGTCGAGCGTTGTATTTGTCATGTCGCTCGAAAGACTGTTTTCGTAAAACCGACTGGGAGAATGTAATGCTTCTCTCGCTCCAATCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1731678 lncRNA upstream 13465 6764378 ~ 6764662 (+) True G1513364
TU1731677 lncRNA upstream 14360 6763403 ~ 6763767 (+) True G1513363
TU1731669 lncRNA upstream 24694 6753050 ~ 6753433 (+) True G1513358
TU1731668 lncRNA upstream 25327 6752464 ~ 6752800 (+) True G1513357
TU1731649 lncRNA upstream 27798 6748420 ~ 6750329 (+) True G1513345
TU1731700 lncRNA downstream 16076 6794590 ~ 6795291 (+) True G1513382
TU1731704 lncRNA downstream 22026 6800540 ~ 6801282 (+) True G1513385
TU1731705 lncRNA downstream 22950 6801464 ~ 6801665 (+) True G1513386
TU1731706 lncRNA downstream 23480 6801994 ~ 6802237 (+) True G1513387
TU1731713 lncRNA downstream 46640 6825154 ~ 6825496 (+) True G1513394
XM_036951555.1 mRNA upstream 67841 6705632 ~ 6710286 (+) False LOC110516612
XM_036951492.1 mRNA upstream 204519 6493403 ~ 6573608 (+) False LOC110514219
XM_036951031.1 mRNA downstream 28765 6807279 ~ 6815311 (+) False syap1
NM_001160536.2 mRNA downstream 29411 6807925 ~ 6815407 (+) True syap1
XM_036951536.1 mRNA downstream 36972 6815486 ~ 6837266 (+) False LOC110495421
XM_036951537.1 mRNA downstream 36972 6815486 ~ 6837266 (+) False LOC110495421
XM_036951539.1 mRNA downstream 37218 6815732 ~ 6837266 (+) False LOC110495421
TU1731618 other upstream 68079 6708659 ~ 6710048 (+) True LOC110516612
TU1731526 other upstream 207648 6550645 ~ 6570479 (+) True LOC110514219
TU1731437 other upstream 318558 6440852 ~ 6459569 (+) True LOC110496964
TU1731419 other upstream 375213 6398763 ~ 6402914 (+) False LOC110495361
TU1731792 other downstream 247694 7026208 ~ 7026810 (+) True G1513452
TU1731799 other downstream 254096 7032610 ~ 7085719 (+) False LOC110513752
TU1731797 other downstream 310318 7088832 ~ 7097160 (+) True LOC110513752
TU1732350 other downstream 648069 7426583 ~ 7426971 (+) True G1513874
TU1732416 other downstream 841782 7620296 ~ 7621941 (+) True G1513922

Expression Profile