RNA id: TU1731706


Basic Information

Item Value
RNA id TU1731706
length 244
lncRNA type intronic
GC content 0.51
exon number 1
gene id G1513387
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6801994 ~ 6802237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttccaacaagtcagtttgtcaaatttctgccctgctagagctgcccccggtcaactgtgagtgctgttattgtgaagtggaaatgtctaggagcaacaacggctcagccccgaagtggtaggccacacaagctcatagaacgggaccgccgagtggaactcactaccgagttccaaactgcctttggaagcaacgtcagcacaagaactgttcgtcaggagcttcatgaaatgggtttccatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1731705 lncRNA upstream 329 6801464 ~ 6801665 (+) True G1513386
TU1731704 lncRNA upstream 712 6800540 ~ 6801282 (+) True G1513385
TU1731700 lncRNA upstream 6703 6794590 ~ 6795291 (+) True G1513382
TU1731672 lncRNA upstream 23387 6778262 ~ 6778607 (+) True G1513359
TU1731671 lncRNA upstream 23480 6778127 ~ 6778514 (+) False G1513359
TU1731713 lncRNA downstream 22917 6825154 ~ 6825496 (+) True G1513394
TU1731716 lncRNA downstream 28427 6830664 ~ 6831567 (+) False G1513396
TU1731717 lncRNA downstream 28427 6830664 ~ 6831567 (+) False G1513396
TU1731718 lncRNA downstream 28427 6830664 ~ 6831567 (+) True G1513396
TU1731722 lncRNA downstream 54019 6856256 ~ 6856879 (+) True G1513399
XM_036951555.1 mRNA upstream 91708 6705632 ~ 6710286 (+) False LOC110516612
XM_036951492.1 mRNA upstream 228386 6493403 ~ 6573608 (+) False LOC110514219
XM_036951031.1 mRNA downstream 5042 6807279 ~ 6815311 (+) False syap1
NM_001160536.2 mRNA downstream 5688 6807925 ~ 6815407 (+) True syap1
XM_036951536.1 mRNA downstream 13249 6815486 ~ 6837266 (+) False LOC110495421
XM_036951537.1 mRNA downstream 13249 6815486 ~ 6837266 (+) False LOC110495421
XM_036951539.1 mRNA downstream 13495 6815732 ~ 6837266 (+) False LOC110495421
TU1731618 other upstream 91946 6708659 ~ 6710048 (+) True LOC110516612
TU1731526 other upstream 231515 6550645 ~ 6570479 (+) True LOC110514219
TU1731437 other upstream 342425 6440852 ~ 6459569 (+) True LOC110496964
TU1731419 other upstream 399080 6398763 ~ 6402914 (+) False LOC110495361
TU1731792 other downstream 223971 7026208 ~ 7026810 (+) True G1513452
TU1731799 other downstream 230373 7032610 ~ 7085719 (+) False LOC110513752
TU1731797 other downstream 286595 7088832 ~ 7097160 (+) True LOC110513752
TU1732350 other downstream 624346 7426583 ~ 7426971 (+) True G1513874
TU1732416 other downstream 818059 7620296 ~ 7621941 (+) True G1513922

Expression Profile