RNA id: TU1732372


Basic Information

Item Value
RNA id TU1732372
length 210
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1513892
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 7493955 ~ 7494164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acattactgtaccacattactgtaccacattactgtaccacagagctataccacagagctgtaccacagagctgtaccacattactgtatcacagagctgtaccacagagctgtaccacagagctctaccacattactgtaccacattactgtaccacattactgtaccacagagctgtaccacagagctataccacagagctgtaccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1732369 lncRNA upstream 2711 7490621 ~ 7491244 (+) True G1513889
TU1732367 lncRNA upstream 13193 7480409 ~ 7480762 (+) True G1513887
TU1732360 lncRNA upstream 36924 7456247 ~ 7457031 (+) True G1513880
TU1732331 lncRNA upstream 45212 7445791 ~ 7448743 (+) True LOC110495412
TU1732351 lncRNA upstream 62992 7430599 ~ 7430963 (+) True G1513875
TU1732327 lncRNA downstream 82654 7576818 ~ 7581314 (+) True LOC110495403
TU1732398 lncRNA downstream 90202 7584366 ~ 7603443 (+) True G1513914
TU1732413 lncRNA downstream 112321 7606485 ~ 7607479 (+) False G1513921
TU1732411 lncRNA downstream 112517 7606681 ~ 7607479 (+) False G1513921
TU1732414 lncRNA downstream 112517 7606681 ~ 7607479 (+) True G1513921
XM_036951568.1 mRNA upstream 45538 7431822 ~ 7448417 (+) False LOC110495412
XM_036951569.1 mRNA upstream 45538 7431822 ~ 7448417 (+) False LOC110495412
XM_036951571.1 mRNA upstream 45538 7431822 ~ 7448417 (+) False LOC110495412
XM_036951572.1 mRNA upstream 47212 7431822 ~ 7446743 (+) False LOC110495412
XM_036951564.1 mRNA upstream 63930 7407365 ~ 7430025 (+) True LOC110495413
XM_036951573.1 mRNA downstream 20404 7514568 ~ 7532019 (+) False LOC110495411
XR_005037357.1 mRNA downstream 20404 7514568 ~ 7532019 (+) False LOC110495411
XR_005037358.1 mRNA downstream 20404 7514568 ~ 7532019 (+) False LOC110495411
XR_005037359.1 mRNA downstream 20404 7514568 ~ 7532019 (+) False LOC110495411
XR_005037361.1 mRNA downstream 20404 7514568 ~ 7532019 (+) False LOC110495411
TU1732350 other upstream 66984 7426583 ~ 7426971 (+) True G1513874
TU1731797 other upstream 396795 7088832 ~ 7097160 (+) True LOC110513752
TU1731799 other upstream 408236 7032610 ~ 7085719 (+) False LOC110513752
TU1731792 other upstream 467145 7026208 ~ 7026810 (+) True G1513452
TU1731618 other upstream 783907 6708659 ~ 6710048 (+) True LOC110516612
TU1732416 other downstream 126132 7620296 ~ 7621941 (+) True G1513922
TU1732464 other downstream 264584 7758748 ~ 7760971 (+) False LOC110511355
TU1732457 other downstream 300106 7794270 ~ 7801058 (+) True LOC110511355
TU1732572 other downstream 519696 8013860 ~ 8015030 (+) True G1514045
TU1732800 other downstream 853063 8347227 ~ 8412799 (+) True G1514180

Expression Profile