RNA id: TU1732581


Basic Information

Item Value
RNA id TU1732581
length 252
lncRNA type intronic
GC content 0.45
exon number 1
gene id G1514053
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8028680 ~ 8028931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATAGGGCTCTGATTGGAAGTCCTCTAACTAGAGTTTAAGTTGTAGCCTAGCAACAACACCTGACTCAACAAATGAAGATCCAGGATGGAAGGACATTCATATCAGTTGTTCCTCTAACTAGACTAGAGGGAGTCATAGCAACACAGGGACTGTACTAGAGGGAGTCATAGCAACACAGGGACTGTACTAGAGGGAGTCATAGCAACACAGGGACTGTACTAGAGGGAGTGATAGCAACACAGGGACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1732580 lncRNA upstream 1411 8027023 ~ 8027269 (+) True G1514052
TU1732579 lncRNA upstream 1823 8026637 ~ 8026857 (+) True G1514051
TU1732578 lncRNA upstream 6465 8021909 ~ 8022215 (+) True G1514050
TU1732577 lncRNA upstream 7436 8020500 ~ 8021244 (+) True G1514049
TU1732576 lncRNA upstream 8373 8019949 ~ 8020307 (+) True G1514048
TU1732582 lncRNA downstream 1772 8030703 ~ 8031014 (+) True G1514054
TU1732583 lncRNA downstream 4090 8033021 ~ 8033346 (+) True G1514055
TU1732584 lncRNA downstream 4640 8033571 ~ 8034238 (+) True G1514056
TU1732586 lncRNA downstream 5913 8034844 ~ 8035079 (+) True G1514058
TU1732587 lncRNA downstream 6773 8035704 ~ 8035978 (+) True G1514059
XR_005037365.1 mRNA upstream 65600 7962583 ~ 7963080 (+) False LOC118941084
XM_036951398.1 mRNA upstream 81870 7891187 ~ 7946810 (+) True spag17
XM_036951593.1 mRNA upstream 139976 7801623 ~ 7888704 (+) False LOC110516423
XM_036951592.1 mRNA upstream 231468 7758036 ~ 7797212 (+) False LOC110511355
XM_036951397.1 mRNA upstream 274956 7742795 ~ 7753724 (+) True LOC110511354
XM_036951618.1 mRNA downstream 440468 8469399 ~ 8472026 (+) False LOC118941085
XM_036951619.1 mRNA downstream 440478 8469409 ~ 8472672 (+) True LOC118941085
XM_036951633.1 mRNA downstream 446121 8475052 ~ 8479361 (+) False LOC110528836
XM_036951631.1 mRNA downstream 446155 8475086 ~ 8479361 (+) False LOC110528836
XM_036951632.1 mRNA downstream 446526 8475457 ~ 8479361 (+) False LOC110528836
TU1732572 other upstream 13650 8013860 ~ 8015030 (+) True G1514045
TU1732457 other upstream 227622 7794270 ~ 7801058 (+) True LOC110511355
TU1732464 other upstream 267709 7758748 ~ 7760971 (+) False LOC110511355
TU1732416 other upstream 406739 7620296 ~ 7621941 (+) True G1513922
TU1732350 other upstream 601709 7426583 ~ 7426971 (+) True G1513874
TU1732800 other downstream 318296 8347227 ~ 8412799 (+) True G1514180
TU1732862 other downstream 469619 8498550 ~ 8504336 (+) True LOC110528849
TU1732918 other downstream 547562 8576493 ~ 8576825 (+) True G1514274
TU1732723 other downstream 645398 8674329 ~ 8676511 (+) False LOC110495394
TU1732736 other downstream 645398 8674329 ~ 8676511 (+) False LOC110495394

Expression Profile