RNA id: TU1732582


Basic Information

Item Value
RNA id TU1732582
length 207
lncRNA type intronic
GC content 0.47
exon number 2
gene id G1514054
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8030703 ~ 8031014 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATGACAcgtcacacacacaatatcacacacacacatgtgggggaacagaggaatacatGCAGAGTGATtgggggaatgaaaaccaggtgtgcagggaacagaGGAATACATGCAgagtgattggggaatgaaaaccaggtgtgcagggaacagaggaataaatacatgcagagtgattggggaatgaaaaccaggtgtgcaggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1732581 lncRNA upstream 1772 8028680 ~ 8028931 (+) True G1514053
TU1732580 lncRNA upstream 3434 8027023 ~ 8027269 (+) True G1514052
TU1732579 lncRNA upstream 3846 8026637 ~ 8026857 (+) True G1514051
TU1732578 lncRNA upstream 8488 8021909 ~ 8022215 (+) True G1514050
TU1732577 lncRNA upstream 9459 8020500 ~ 8021244 (+) True G1514049
TU1732583 lncRNA downstream 2007 8033021 ~ 8033346 (+) True G1514055
TU1732584 lncRNA downstream 2557 8033571 ~ 8034238 (+) True G1514056
TU1732586 lncRNA downstream 3830 8034844 ~ 8035079 (+) True G1514058
TU1732587 lncRNA downstream 4690 8035704 ~ 8035978 (+) True G1514059
TU1732588 lncRNA downstream 10288 8041302 ~ 8041566 (+) True G1514060
XR_005037365.1 mRNA upstream 67623 7962583 ~ 7963080 (+) False LOC118941084
XM_036951398.1 mRNA upstream 83893 7891187 ~ 7946810 (+) True spag17
XM_036951593.1 mRNA upstream 141999 7801623 ~ 7888704 (+) False LOC110516423
XM_036951592.1 mRNA upstream 233491 7758036 ~ 7797212 (+) False LOC110511355
XM_036951397.1 mRNA upstream 276979 7742795 ~ 7753724 (+) True LOC110511354
XM_036951618.1 mRNA downstream 438385 8469399 ~ 8472026 (+) False LOC118941085
XM_036951619.1 mRNA downstream 438395 8469409 ~ 8472672 (+) True LOC118941085
XM_036951633.1 mRNA downstream 444038 8475052 ~ 8479361 (+) False LOC110528836
XM_036951631.1 mRNA downstream 444072 8475086 ~ 8479361 (+) False LOC110528836
XM_036951632.1 mRNA downstream 444443 8475457 ~ 8479361 (+) False LOC110528836
TU1732572 other upstream 15673 8013860 ~ 8015030 (+) True G1514045
TU1732457 other upstream 229645 7794270 ~ 7801058 (+) True LOC110511355
TU1732464 other upstream 269732 7758748 ~ 7760971 (+) False LOC110511355
TU1732416 other upstream 408762 7620296 ~ 7621941 (+) True G1513922
TU1732350 other upstream 603732 7426583 ~ 7426971 (+) True G1513874
TU1732800 other downstream 316213 8347227 ~ 8412799 (+) True G1514180
TU1732862 other downstream 467536 8498550 ~ 8504336 (+) True LOC110528849
TU1732918 other downstream 545479 8576493 ~ 8576825 (+) True G1514274
TU1732723 other downstream 643315 8674329 ~ 8676511 (+) False LOC110495394
TU1732736 other downstream 643315 8674329 ~ 8676511 (+) False LOC110495394

Expression Profile