RNA id: TU1732587


Basic Information

Item Value
RNA id TU1732587
length 275
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G1514059
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8035704 ~ 8035978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGGGTTCCACATTGTCAGGGTTTTCCTCTAGGGTGGTCCTGGTGGTTGAGGTCCACGAGGAGAGGTAAGTCAGCCGGTCCTGGAAGTGAGACAGCTCCTTCAGCAAGCTCTCAATCTGCTTCTGCTTCTCAGGCAGGTCTTTAgacacctatagggaggagggagaggaaggacccGAGTGTTTTCAATGGTAGGGAGGAGGAAGGCACATCCAGGAATATTATATTGAAGGAAAACAGGAACTTAATATGAAGCAGGATACAGTCCTCtcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1732586 lncRNA upstream 625 8034844 ~ 8035079 (+) True G1514058
TU1732584 lncRNA upstream 1466 8033571 ~ 8034238 (+) True G1514056
TU1732583 lncRNA upstream 2358 8033021 ~ 8033346 (+) True G1514055
TU1732582 lncRNA upstream 4690 8030703 ~ 8031014 (+) True G1514054
TU1732581 lncRNA upstream 6773 8028680 ~ 8028931 (+) True G1514053
TU1732588 lncRNA downstream 5324 8041302 ~ 8041566 (+) True G1514060
TU1732590 lncRNA downstream 7376 8043354 ~ 8043565 (+) True G1514062
TU1732591 lncRNA downstream 7828 8043806 ~ 8044216 (+) True G1514063
TU1732592 lncRNA downstream 8667 8044645 ~ 8045093 (+) True G1514064
TU1732593 lncRNA downstream 10722 8046700 ~ 8047206 (+) True G1514065
XR_005037365.1 mRNA upstream 72624 7962583 ~ 7963080 (+) False LOC118941084
XM_036951398.1 mRNA upstream 88894 7891187 ~ 7946810 (+) True spag17
XM_036951593.1 mRNA upstream 147000 7801623 ~ 7888704 (+) False LOC110516423
XM_036951592.1 mRNA upstream 238492 7758036 ~ 7797212 (+) False LOC110511355
XM_036951397.1 mRNA upstream 281980 7742795 ~ 7753724 (+) True LOC110511354
XM_036951618.1 mRNA downstream 433421 8469399 ~ 8472026 (+) False LOC118941085
XM_036951619.1 mRNA downstream 433431 8469409 ~ 8472672 (+) True LOC118941085
XM_036951633.1 mRNA downstream 439074 8475052 ~ 8479361 (+) False LOC110528836
XM_036951631.1 mRNA downstream 439108 8475086 ~ 8479361 (+) False LOC110528836
XM_036951632.1 mRNA downstream 439479 8475457 ~ 8479361 (+) False LOC110528836
TU1732572 other upstream 20674 8013860 ~ 8015030 (+) True G1514045
TU1732457 other upstream 234646 7794270 ~ 7801058 (+) True LOC110511355
TU1732464 other upstream 274733 7758748 ~ 7760971 (+) False LOC110511355
TU1732416 other upstream 413763 7620296 ~ 7621941 (+) True G1513922
TU1732350 other upstream 608733 7426583 ~ 7426971 (+) True G1513874
TU1732800 other downstream 311249 8347227 ~ 8412799 (+) True G1514180
TU1732862 other downstream 462572 8498550 ~ 8504336 (+) True LOC110528849
TU1732918 other downstream 540515 8576493 ~ 8576825 (+) True G1514274
TU1732723 other downstream 638351 8674329 ~ 8676511 (+) False LOC110495394
TU1732736 other downstream 638351 8674329 ~ 8676511 (+) False LOC110495394

Expression Profile