RNA id: TU1732590


Basic Information

Item Value
RNA id TU1732590
length 212
lncRNA type antisense_over
GC content 0.57
exon number 1
gene id G1514062
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8043354 ~ 8043565 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgactgtaccgTGACTTTCTCCAGGGTGGCGTTCATCTGGTGGTGATCTCCAGGCGTCAGGGGGATGGCCACGACCTCCTCAGCCTCATCCAGCCAGGACAGAAACTCCCCCATGTCCTCCTGCAGCCCCATCGTTGCAGTACGTGCCTCTgcagacctgacacacacaggaacagtTAGGAGGAATaccgtttacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1732588 lncRNA upstream 1788 8041302 ~ 8041566 (+) True G1514060
TU1732587 lncRNA upstream 7376 8035704 ~ 8035978 (+) True G1514059
TU1732586 lncRNA upstream 8275 8034844 ~ 8035079 (+) True G1514058
TU1732584 lncRNA upstream 9116 8033571 ~ 8034238 (+) True G1514056
TU1732583 lncRNA upstream 10008 8033021 ~ 8033346 (+) True G1514055
TU1732591 lncRNA downstream 241 8043806 ~ 8044216 (+) True G1514063
TU1732592 lncRNA downstream 1080 8044645 ~ 8045093 (+) True G1514064
TU1732593 lncRNA downstream 3135 8046700 ~ 8047206 (+) True G1514065
TU1732595 lncRNA downstream 3923 8047488 ~ 8048063 (+) True G1514066
TU1732599 lncRNA downstream 5784 8049349 ~ 8049579 (+) True G1514068
XR_005037365.1 mRNA upstream 80274 7962583 ~ 7963080 (+) False LOC118941084
XM_036951398.1 mRNA upstream 96544 7891187 ~ 7946810 (+) True spag17
XM_036951593.1 mRNA upstream 154650 7801623 ~ 7888704 (+) False LOC110516423
XM_036951592.1 mRNA upstream 246142 7758036 ~ 7797212 (+) False LOC110511355
XM_036951397.1 mRNA upstream 289630 7742795 ~ 7753724 (+) True LOC110511354
XM_036951618.1 mRNA downstream 425834 8469399 ~ 8472026 (+) False LOC118941085
XM_036951619.1 mRNA downstream 425844 8469409 ~ 8472672 (+) True LOC118941085
XM_036951633.1 mRNA downstream 431487 8475052 ~ 8479361 (+) False LOC110528836
XM_036951631.1 mRNA downstream 431521 8475086 ~ 8479361 (+) False LOC110528836
XM_036951632.1 mRNA downstream 431892 8475457 ~ 8479361 (+) False LOC110528836
TU1732572 other upstream 28324 8013860 ~ 8015030 (+) True G1514045
TU1732457 other upstream 242296 7794270 ~ 7801058 (+) True LOC110511355
TU1732464 other upstream 282383 7758748 ~ 7760971 (+) False LOC110511355
TU1732416 other upstream 421413 7620296 ~ 7621941 (+) True G1513922
TU1732350 other upstream 616383 7426583 ~ 7426971 (+) True G1513874
TU1732800 other downstream 303662 8347227 ~ 8412799 (+) True G1514180
TU1732862 other downstream 454985 8498550 ~ 8504336 (+) True LOC110528849
TU1732918 other downstream 532928 8576493 ~ 8576825 (+) True G1514274
TU1732723 other downstream 630764 8674329 ~ 8676511 (+) False LOC110495394
TU1732736 other downstream 630764 8674329 ~ 8676511 (+) False LOC110495394

Expression Profile