RNA id: TU1732638


Basic Information

Item Value
RNA id TU1732638
length 1077
lncRNA type intronic
GC content 0.34
exon number 2
gene id G1514096
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8106131 ~ 8108540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actctaccacttcactatgatatactatatcctctaccacttcactataatatactatatactctaccacttcattataatatactatatactcacagcccttctggtctgctgtcagactctaccacttcactataatatactatatcctctaccacttcactatgatatactatatactctaccacttcactataatatactatatactctaccacttcactataatatactatatactcacagcccttctggtctgctgtcagactctactacttcactataatatactatatactctaccacttcactataatatactatatactcacagcccttctggtctgctgtcagactctaccacttcactataatatactatatcctctaccacttcactatgatatactatatactctaccacttcactataatatactatatactcacaGCCCTTCTGGCCTGCTGtcagactctaccacttcactataatatactatatactctaccacttcaccaTAATATCCTATATACTCTAGCActtcactatgatatactatatactctaccacttcactataatatactatatactcacaGCCCTTCTGGTCTGCTGACAGACTCTACcatttcactataatatactatatcctataccacttcactatgatatactatatactctaccacttctctataatatactatatactcacagcccttctggtctgctgtcagactctaccacttcactataatatactatatcctctaccacttcactatgatatactatatactcacagcccttctggtctgctgtcagactctaccacttcactataatatactatatactctaccacttcactataatatactatatactctaccacttcactataatatactatatactctaccacttcactatatatactatatactctaccacttcactataatatactatatactctaccacttcactataataaactatatactcacagcccttctggtctgctgtcagactctaccacttcactataatatactatatactgacagcccttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1732634 lncRNA upstream 7081 8098183 ~ 8099050 (+) True G1514093
TU1732614 lncRNA upstream 36675 8063851 ~ 8069456 (+) True G1514080
TU1732608 lncRNA upstream 46601 8057020 ~ 8059530 (+) True G1514076
TU1732606 lncRNA upstream 49414 8056372 ~ 8056717 (+) True G1514075
TU1732601 lncRNA upstream 53336 8052462 ~ 8052795 (+) True G1514070
TU1732669 lncRNA downstream 88012 8196552 ~ 8197158 (+) True G1514125
TU1732686 lncRNA downstream 112053 8220593 ~ 8221079 (+) True G1514135
TU1732788 lncRNA downstream 210924 8319464 ~ 8319939 (+) True G1514172
TU1732793 lncRNA downstream 227616 8336156 ~ 8415932 (+) True G1514176
TU1732811 lncRNA downstream 258674 8367214 ~ 8368476 (+) False G1514189
XR_005037365.1 mRNA upstream 143051 7962583 ~ 7963080 (+) False LOC118941084
XM_036951398.1 mRNA upstream 159321 7891187 ~ 7946810 (+) True spag17
XM_036951593.1 mRNA upstream 217427 7801623 ~ 7888704 (+) False LOC110516423
XM_036951592.1 mRNA upstream 308919 7758036 ~ 7797212 (+) False LOC110511355
XM_036951397.1 mRNA upstream 352407 7742795 ~ 7753724 (+) True LOC110511354
XM_036951618.1 mRNA downstream 360859 8469399 ~ 8472026 (+) False LOC118941085
XM_036951619.1 mRNA downstream 360869 8469409 ~ 8472672 (+) True LOC118941085
XM_036951633.1 mRNA downstream 366512 8475052 ~ 8479361 (+) False LOC110528836
XM_036951631.1 mRNA downstream 366546 8475086 ~ 8479361 (+) False LOC110528836
XM_036951632.1 mRNA downstream 366917 8475457 ~ 8479361 (+) False LOC110528836
TU1732572 other upstream 91101 8013860 ~ 8015030 (+) True G1514045
TU1732457 other upstream 305073 7794270 ~ 7801058 (+) True LOC110511355
TU1732464 other upstream 345160 7758748 ~ 7760971 (+) False LOC110511355
TU1732416 other upstream 484190 7620296 ~ 7621941 (+) True G1513922
TU1732350 other upstream 679160 7426583 ~ 7426971 (+) True G1513874
TU1732800 other downstream 238687 8347227 ~ 8412799 (+) True G1514180
TU1732862 other downstream 390010 8498550 ~ 8504336 (+) True LOC110528849
TU1732918 other downstream 467953 8576493 ~ 8576825 (+) True G1514274
TU1732723 other downstream 565789 8674329 ~ 8676511 (+) False LOC110495394
TU1732736 other downstream 565789 8674329 ~ 8676511 (+) False LOC110495394

Expression Profile