RNA id: TCONS_00049067


Basic Information

Item Value
RNA id TCONS_00049067
length 1132
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id XLOC_024359
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 276131 ~ 277363 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAAAACCAAAACTACAGCCCGAGGAAGATGAAGAACTCAATAAAAACAGCAGAGATGAAGAGGAAAAGGGAGAACAGCATCCAGATGAAAAGGAAGATCTGAAAGAAAAGTTATCAATAACTGAAATTATTTCATACTCAAAAAGATGGAAAGGCACAATAAAGAGAGGTAAGACCTATTTGACAAGGGCGTAGCTTTGCTTTTGATGTTGGTGAGGATGTAATGCTTtgaaatattgagttactccccaaagaTCTTTTTATGGCAAGTAATGTGTTTcattacttttgcgttactttttctgacttactgaggcttgatctctgcaGTCAACAACACTATAACcttcatttactgtaaaaatcagtcataataataaagaataatgtCATCTAATGAAAGCTTCCTGAGGCAGAGCTCTACATGCCATGTACAGATTAATGACAGCGTAAAGCGGTGTGTTTGCTGTTTTTAGTCTCATTAGTGCAGTAAATCAGTGTGCACTGAGACTATAACACCTTTTTCCTTTTCTCCATGTGTTCAGAATAACGAGAATACTTCCAGCTTTGTAGTAATGTAAGCCAAAGCCATCCTGCTTTCTGTCTGCCGTCTCTAATGGATTCAGTGTGACCTCGCTCAATTAAATTCagctatttttttaagttattttttttaaaggaactcaaatattattactattttttaatgTAGGCTGATGtcttactttacttgttacttagaaaaatCATATTATTATGCAACTCATAGTACTTGATGCGGTTGCCCAAACACTAGAGGCGTGCGATGCAATAACATTGTGTCTTGACTGctgctgttttattttaatcattaatgACAGTTGACTGagcatttgcattattattatgggATATTTCAATAATCTGTGGCTATTGATACTCTGATCAAGCTAATTCTACGCCCTTGCTATTTGAAATAACCGATCCTTCATTTAAGGggactttatttatatttaataaatgccgccttgatgaacaaaataatttaataaaagaattctaatcaaatttttaataaaataataaataaactgaccccaaacttttgattgGTGGTGTAGATCAGTGGgttagtttattaaaataatttaa

Function

GO:

id name namespace
GO:0045595 regulation of cell differentiation biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0060284 regulation of cell development biological_process
GO:0051960 regulation of nervous system development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049066 lncRNA downstream 28 272458 ~ 276103 (-) True XLOC_024358
TCONS_00049298 lncRNA downstream 110151 160873 ~ 165980 (-) True XLOC_024349
TCONS_00049297 lncRNA downstream 110261 160873 ~ 165870 (-) False XLOC_024349
TCONS_00049296 lncRNA downstream 114305 160873 ~ 161826 (-) False XLOC_024349
TCONS_00049295 lncRNA downstream 137983 137544 ~ 138148 (-) True XLOC_024348
TCONS_00049068 lncRNA upstream 10296 287659 ~ 291265 (-) False XLOC_024360
TCONS_00048180 lncRNA upstream 11298 288661 ~ 291347 (-) False XLOC_024360
TCONS_00048181 lncRNA upstream 11298 288661 ~ 294609 (-) True XLOC_024360
TCONS_00049069 lncRNA upstream 27645 305008 ~ 305657 (-) True XLOC_024361
TCONS_00049070 lncRNA upstream 83175 360538 ~ 363768 (-) True XLOC_024363
TCONS_00048179 mRNA downstream 6847 265360 ~ 269284 (-) True XLOC_024357
TCONS_00048178 mRNA downstream 20160 254462 ~ 255971 (-) True XLOC_024356
TCONS_00048176 mRNA downstream 31868 217686 ~ 244263 (-) True XLOC_024354
TCONS_00048177 mRNA downstream 50167 222921 ~ 225964 (-) True XLOC_024355
TCONS_00048175 mRNA downstream 65401 207422 ~ 210730 (-) True XLOC_024353
TCONS_00048182 mRNA upstream 37245 314608 ~ 348784 (-) True XLOC_024362
TCONS_00048183 mRNA upstream 93801 371164 ~ 375882 (-) True XLOC_024364
TCONS_00048184 mRNA upstream 172980 450343 ~ 492549 (-) True XLOC_024365
TCONS_00048185 mRNA upstream 202634 479997 ~ 483808 (-) True XLOC_024367
TCONS_00048186 mRNA upstream 207990 485353 ~ 518656 (-) False XLOC_024368
TCONS_00048188 other upstream 211458 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048212 other upstream 1352292 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048237 other upstream 2738807 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048288 other upstream 4048253 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 4613404 4890767 ~ 4904432 (-) True XLOC_024434

Expression Profile

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