RNA id: TCONS_00048180


Basic Information

Item Value
RNA id TCONS_00048180
length 475
lncRNA type lincRNA
GC content 0.36
exon number 2
gene id XLOC_024360
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 287659 ~ 294609 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atatatatatatatatatatatatatatatttttttttttttgtattgtattgtatagtgTGATGTTTCTATTAGAGCTCGACATAAATGCATAGTTTGTCTTGGGTGACAAATGGCTTTGTTTCTAAAGGAGGGAATTCAGGTCCGAGttttacaataattaattaattctttattcAAAATGAGCTTCCAGATCCAGTTTGTAGATGAAGTCCATGAAGGCCGAGCACCGCTGACAGTGACTGTGGCGAACACAGAGGAGGAGTTCAGGAACACCACAGTTAAAGACCTGCAGAGAAAACTCATCCCAGAAGACGAGTATGAAAACACCATTCTGGTCTATGAATGTTCAACGCTGAAGAGAAATCGCACACTCGGCTCCTATAACATTCAACATGGCTCTGTTATTAGAGGCTTATGGCATGGAGGTATAAATCCTgctcatatttatattattgtagaAATCTCTTTATAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194456

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049067 lncRNA downstream 11298 276131 ~ 277363 (-) True XLOC_024359
TCONS_00049066 lncRNA downstream 12558 272458 ~ 276103 (-) True XLOC_024358
TCONS_00049298 lncRNA downstream 122681 160873 ~ 165980 (-) True XLOC_024349
TCONS_00049297 lncRNA downstream 122791 160873 ~ 165870 (-) False XLOC_024349
TCONS_00049296 lncRNA downstream 126835 160873 ~ 161826 (-) False XLOC_024349
TCONS_00049069 lncRNA upstream 13661 305008 ~ 305657 (-) True XLOC_024361
TCONS_00049070 lncRNA upstream 69191 360538 ~ 363768 (-) True XLOC_024363
TCONS_00049299 lncRNA upstream 163972 455319 ~ 456478 (-) True XLOC_024366
TCONS_00049300 lncRNA upstream 339586 630933 ~ 643106 (-) True XLOC_024369
TCONS_00048198 lncRNA upstream 903935 1195282 ~ 1196112 (-) True XLOC_024375
TCONS_00048179 mRNA downstream 19377 265360 ~ 269284 (-) True XLOC_024357
TCONS_00048178 mRNA downstream 32690 254462 ~ 255971 (-) True XLOC_024356
TCONS_00048176 mRNA downstream 44398 217686 ~ 244263 (-) True XLOC_024354
TCONS_00048177 mRNA downstream 62697 222921 ~ 225964 (-) True XLOC_024355
TCONS_00048175 mRNA downstream 77931 207422 ~ 210730 (-) True XLOC_024353
TCONS_00048182 mRNA upstream 23261 314608 ~ 348784 (-) True XLOC_024362
TCONS_00048183 mRNA upstream 79817 371164 ~ 375882 (-) True XLOC_024364
TCONS_00048184 mRNA upstream 158996 450343 ~ 492549 (-) True XLOC_024365
TCONS_00048185 mRNA upstream 188650 479997 ~ 483808 (-) True XLOC_024367
TCONS_00048186 mRNA upstream 194006 485353 ~ 518656 (-) False XLOC_024368
TCONS_00048188 other upstream 197474 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048212 other upstream 1338308 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048237 other upstream 2724823 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048288 other upstream 4034269 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 4599420 4890767 ~ 4904432 (-) True XLOC_024434

Expression Profile

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