RNA id: TCONS_00049070


Basic Information

Item Value
RNA id TCONS_00049070
length 339
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id XLOC_024363
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 360538 ~ 363768 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTATTGTGTGCAGCGTCCATCATTTAACCTGCCTGTGACATCATGAATGGAGTGGCCCCGCCCCCTCAGCCGTCCAACCAACCAGAGGCCGGCGCGGAGTTCTTAATGAAGTGCAGTGTTTTTCAGAGTGCAGTGAGGATGATGATGGtgaagatgatgatgacgacGGCTGGATTCGGACGCTCCGGGAAGAGTTTTCTGATGGAGAATCTGCTGCGGTCGACTCCAGTCCAGATCTACAGGACAAACACTGGTCCGGGGTCAGAAAACAGACAGCACACACAGAGGATTCACACTCCAGCAGTAATTATGTCCACCGTTAATCTGCCCTGTTGCTCT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0045445 myoblast differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0045661 regulation of myoblast differentiation biological_process
GO:0045663 positive regulation of myoblast differentiation biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049069 lncRNA downstream 54881 305008 ~ 305657 (-) True XLOC_024361
TCONS_00048181 lncRNA downstream 65929 288661 ~ 294609 (-) True XLOC_024360
TCONS_00048180 lncRNA downstream 69191 288661 ~ 291347 (-) False XLOC_024360
TCONS_00049068 lncRNA downstream 69273 287659 ~ 291265 (-) False XLOC_024360
TCONS_00049067 lncRNA downstream 83175 276131 ~ 277363 (-) True XLOC_024359
TCONS_00049299 lncRNA upstream 91551 455319 ~ 456478 (-) True XLOC_024366
TCONS_00049300 lncRNA upstream 267165 630933 ~ 643106 (-) True XLOC_024369
TCONS_00048198 lncRNA upstream 831514 1195282 ~ 1196112 (-) True XLOC_024375
TCONS_00049301 lncRNA upstream 912515 1276283 ~ 1308073 (-) False XLOC_024377
TCONS_00049071 lncRNA upstream 942010 1305778 ~ 1306027 (-) False XLOC_024377
TCONS_00048182 mRNA downstream 11754 314608 ~ 348784 (-) True XLOC_024362
TCONS_00048179 mRNA downstream 91254 265360 ~ 269284 (-) True XLOC_024357
TCONS_00048178 mRNA downstream 104567 254462 ~ 255971 (-) True XLOC_024356
TCONS_00048176 mRNA downstream 116275 217686 ~ 244263 (-) True XLOC_024354
TCONS_00048177 mRNA downstream 134574 222921 ~ 225964 (-) True XLOC_024355
TCONS_00048183 mRNA upstream 7396 371164 ~ 375882 (-) True XLOC_024364
TCONS_00048184 mRNA upstream 86575 450343 ~ 492549 (-) True XLOC_024365
TCONS_00048185 mRNA upstream 116229 479997 ~ 483808 (-) True XLOC_024367
TCONS_00048186 mRNA upstream 121585 485353 ~ 518656 (-) False XLOC_024368
TCONS_00048187 mRNA upstream 124737 488505 ~ 554142 (-) False XLOC_024368
TCONS_00048188 other upstream 125053 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048212 other upstream 1265887 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048237 other upstream 2652402 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048288 other upstream 3961848 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 4526999 4890767 ~ 4904432 (-) True XLOC_024434

Expression Profile

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