RNA id: TU1733883


Basic Information

Item Value
RNA id TU1733883
length 2058
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G1514996
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8985179 ~ 8987654 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGATGTTTTAACAACTTTATCTTTCATAAGATTATAATGTGATTTTATAGCACACAAATCCCGATAGGACTTTTTACTCTGATACATCCAAAGTGAAAAGCATAAACAACCGTACAAATACATTGTTGGCACACCAAATTAACTCTGACTTTGTACTATACTGGCATATCAATCATTCTATTTCATATGATCTTGTCAAAAATGATATTTTGGTAGTTACTAGCTAGACatattttttaaaaaatgatatTTTGGTAGTTACTAGATAGACATATTTGACCATTCCAGAACAAAACCTCAGATTTTTCATCGTTGAAGAGTACGGTACATTTAATAcgttctacatctgcattgcttgctcttttgAGTTTTCTGTATAAGGCCTTTGTGACGTCTGCAGATataaaaagagctttataaatacattagaTTGACTGAAAAAGTCTGCCCTCATTAcggtaaatcactctggataggagcgtctgctaaataactcattactgtaaatcactctggataggagtgtctgctaaataactcattactgtaaatcactctggataggagtgtctgctaaataactcattactgtaaatcattctggataggagccgtctgctaaataactcattactgtaaatcactctggataggagcgtctgctaaataactTGAATGTAAATCGCGAACATTCTGATGCCCTTGAAATCACAGCCTGTTTTGGTGCGACAGCATATAAACACAGAAAAAAACACTCTGAAAATTCTGTTTTTCCTGTGTTTAATATcatacagctgatgaaactgacactgacagtgttatttcctgatagttgctggttgaaaatgcaATCTACACAGggccttctaatcagcaggtttgtaTGGGCGGGAGGTTAGActttccattgtgacatcatgcgatacattttttttaatagacCAACAGCAAAATGTTCCATACCTCTCttcccaataacagctagttttgagttttcccctccccactcagaccacaccCAAACTGTCCTAGCTAaagtcttgcttgagaaattgctctttgctaagaaactACTTGTTTTAATTGAATACAATCACAGTAAAATACTtatttgttacccagaaatgatttgatatccAGATAAAAACagatgcattggacctttaaaaaaCACATCAACATACAGGTCTGTTTCCCAAACCTGTTGTAATTGTGCAGGGTTGTGTCATTATGCATAGCGTTGAAATGCATTGATTGATGTTTTCACAattaaaaccattttttttttcagtAAAGATTGGTTTCACAATTATTGGTTCAGTACATGGGATGGGGCACAGTCTGATCATTTAAATAGCCATCACAAAGCAACATGGGAATTCCCTCTGTAGGCAGTGTCTACATTCTATGATCAAGATCGCAAAATATAGCAAAGATTTAAGACTTTCATATGAATGCATTGCGCTTGCAACgctagggttgtgggttggattcccacgggggaccagttgGGGGGGAACAGTATGAAAATGGGTTGTGGGTtggattcccacgggggaccagttgGGGGGGAACAGTATGAAAATGGGTTGTGGGTTAGATTCCCACGGGGAACCAGTTGGGGGGGAACAGTATGAAAATGGGTTGTGGGTTGGATTCCCTCGGGGGACCAGTTGGGGGTGAACAGTATGTCCTCACTATCTGtaggtcgctctggataagagcatctgctaaatgactcacgtCATGAGAAAGCAGCAACAACAGTTTGTCCACCAATCAAGTTCATACGACCTCATATTCTTTATATTGTCGTTAATAtcacagtgtgtttgtgtatggcTGTGAGCTGTAGGTGTAATTAACgtgttccgtgtgtgtgtgcacgaggTGTTTGTGCGCACATGACCCAGCCGTCACGGGGACACGGTCACAGGTCACTGCACTCAGAGAAggacctctccctcttctccctggcCGTGACGAAGTTGAGCAGGTCGATGGCCGTCACCACACCAAACACCATCTGCTTCAGGCTGGGGGAGCCGTCCGTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1733822 lncRNA upstream 66983 8918010 ~ 8918251 (+) True G1514971
TU1733819 lncRNA upstream 73102 8910152 ~ 8912132 (+) False G1514968
TU1733818 lncRNA upstream 73102 8910349 ~ 8912132 (+) True G1514968
TU1733816 lncRNA upstream 76740 8907922 ~ 8908494 (+) False G1514967
TU1733889 lncRNA downstream 2055 8989653 ~ 8990784 (+) True G1514998
TU1733899 lncRNA downstream 15610 9003208 ~ 9004114 (+) True G1515006
TU1733961 lncRNA downstream 93182 9080780 ~ 9081368 (+) True G1515044
TU1733983 lncRNA downstream 110125 9097723 ~ 9116851 (+) True G1515058
TU1734001 lncRNA downstream 151390 9138988 ~ 9140844 (+) True G1515076
XM_036951401.1 mRNA upstream 16448 8950376 ~ 8968786 (+) True LOC110496974
XM_036951673.1 mRNA upstream 35042 8948861 ~ 8950192 (+) True LOC110496912
XM_036951672.1 mRNA upstream 37597 8935195 ~ 8947637 (+) True hsf2bp
XM_036951671.1 mRNA upstream 51353 8928933 ~ 8933881 (+) True LOC110495382
XM_036951400.1 mRNA upstream 132790 8847990 ~ 8852444 (+) True LOC118941058
XM_036951678.1 mRNA downstream 35518 9023116 ~ 9030662 (+) False LOC110527296
XM_036951681.1 mRNA downstream 35518 9023116 ~ 9030662 (+) False LOC110527296
XM_036951677.1 mRNA downstream 35520 9023118 ~ 9030662 (+) False LOC110527296
XM_036951676.1 mRNA downstream 35522 9023120 ~ 9030662 (+) False LOC110527296
XM_036951682.1 mRNA downstream 38206 9025804 ~ 9030662 (+) False LOC110527296
TU1732757 other upstream 305024 8678448 ~ 8680210 (+) True LOC110495395
TU1732723 other upstream 308723 8674329 ~ 8676511 (+) False LOC110495394
TU1732736 other upstream 308723 8674329 ~ 8676511 (+) False LOC110495394
TU1732741 other upstream 308723 8674329 ~ 8676511 (+) True LOC110495394
TU1732918 other upstream 408409 8576493 ~ 8576825 (+) True G1514274
TU1733898 other downstream 12800 9000398 ~ 9003126 (+) True G1515005
TU1734946 other downstream 986930 9974528 ~ 9975306 (+) True G1515776
TU1735043 other downstream 1182504 10170102 ~ 10171956 (+) True G1515853
TU1735389 other downstream 1331712 10319310 ~ 10327138 (+) True G1516136
TU1735992 other downstream 2029167 11016765 ~ 11017089 (+) True G1516637

Expression Profile