RNA id: TU1734026


Basic Information

Item Value
RNA id TU1734026
length 629
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G1515098
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9177650 ~ 9178516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctccatttgcaatatgatgtcataggaagtcaaaagtcaaagtcaaaagtaaatattttcctccgtgcacctggtgatctgaaatgtgcacctggtgacctgaaatgtgcacctggtgatctaaaatatgcaactggtaacccaaaaaaaaaattttgggatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcaggtaccatcacgaatttgtcatgctcaaaattcaagcttgtgatctaaaatatgcagctggttacccaacattttttgggatgtttttttgtttatgtttccttactttttcaaagtcactgtgtatttgcaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtatttttttttgtttccttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1734001 lncRNA upstream 36806 9138988 ~ 9140844 (+) True G1515076
TU1733983 lncRNA upstream 60799 9097723 ~ 9116851 (+) True G1515058
TU1733961 lncRNA upstream 96282 9080780 ~ 9081368 (+) True G1515044
TU1733899 lncRNA upstream 173536 9003208 ~ 9004114 (+) True G1515006
TU1733889 lncRNA upstream 186866 8989653 ~ 8990784 (+) True G1514998
TU1734042 lncRNA downstream 34060 9212576 ~ 9229128 (+) False G1515109
TU1734049 lncRNA downstream 39745 9218261 ~ 9223736 (+) True G1515110
TU1734041 lncRNA downstream 44865 9223381 ~ 9229128 (+) True G1515109
TU1734269 lncRNA downstream 76012 9254528 ~ 9255405 (+) True LOC110497024
TU1734270 lncRNA downstream 123210 9301726 ~ 9311147 (+) False G1515266
XM_036951694.1 mRNA upstream 17643 9134562 ~ 9160007 (+) True LOC100653484
XM_036951402.1 mRNA upstream 48992 9115618 ~ 9128658 (+) True LOC110523347
LOC118941059 mRNA upstream 66167 9108236 ~ 9111483 (+) True LOC118941059
XM_036951693.1 mRNA upstream 77164 9094895 ~ 9100486 (+) True LOC118941086
XM_036951680.1 mRNA upstream 146988 9025810 ~ 9030662 (+) True LOC110527296
XM_036951705.1 mRNA downstream 68311 9246827 ~ 9255405 (+) False LOC110497024
XM_036951706.1 mRNA downstream 68410 9246926 ~ 9255405 (+) False LOC110497024
XM_036951708.1 mRNA downstream 78058 9256574 ~ 9299643 (+) True LOC110495547
XM_036951734.1 mRNA downstream 322992 9501508 ~ 9546957 (+) False LOC110495570
XM_036951731.1 mRNA downstream 322992 9501508 ~ 9550995 (+) False LOC110495570
TU1733898 other upstream 174524 9000398 ~ 9003126 (+) True G1515005
TU1732757 other upstream 497440 8678448 ~ 8680210 (+) True LOC110495395
TU1732723 other upstream 501139 8674329 ~ 8676511 (+) False LOC110495394
TU1734946 other downstream 796012 9974528 ~ 9975306 (+) True G1515776
TU1735043 other downstream 991586 10170102 ~ 10171956 (+) True G1515853
TU1735389 other downstream 1140794 10319310 ~ 10327138 (+) True G1516136
TU1735992 other downstream 1838249 11016765 ~ 11017089 (+) True G1516637
TU1735957 other downstream 1907569 11086085 ~ 11092554 (+) True LOC118941092

Expression Profile