RNA id: TU1735277


Basic Information

Item Value
RNA id TU1735277
length 506
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1516039
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10168026 ~ 10168977 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagGTGTTTGCTGTGCACTCAGTCCTCATCTTCAAGCCCACTCCCATGTCAGCTGTCTGACCACCACATGAACTTTGGATGTTACGTCCCAAATTCGTCTCCCTGAAACATCATTATGCACACACCAGTGTTGATGTATTTCCTGTTTCCAGGTTCCTGTCAGAGACGCATCATGTTTCCTGTTTGTGATCAGAGACACGTCAGTAAGTTAGTAAAAACATTCAAAGAACTACtgaaagagagaaaacatttcCCATTTACTTTGTGTCTGCAGTCGACACGTCATTTTTAACTTGTCTTTGTGCATCAGAACTTGGTTATACAACAATGGCTTTCACTGCTTTGTGTGGGAGTAAATCACTGCTTTGTGTGGGAGTAAATCACTGCTTTGTGTTGGAGTAAATGAAAATGTATTGTACACCATCCTTAGTGAAACAGCACCTTTTTCTACCAGCGCCCCCCACCCATATTCCTAACTgtactctctttctcactccttttcTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735284 lncRNA downstream 1735 10166104 ~ 10166492 (-) True G1516046
TU1735274 lncRNA downstream 8839 10159169 ~ 10159388 (-) True G1516038
TU1735249 lncRNA downstream 9829 10156466 ~ 10158398 (-) True LOC110495586
TU1735261 lncRNA downstream 51480 10116004 ~ 10116747 (-) True G1516026
TU1735259 lncRNA downstream 55007 10112935 ~ 10113220 (-) True G1516024
TU1735280 lncRNA upstream 557 10169289 ~ 10169803 (-) True G1516042
TU1735279 lncRNA upstream 4384 10173116 ~ 10173729 (-) True G1516041
TU1735290 lncRNA upstream 33243 10201975 ~ 10202251 (-) True G1516052
TU1735291 lncRNA upstream 34816 10203548 ~ 10203764 (-) True G1516053
TU1735294 lncRNA upstream 36937 10205669 ~ 10205921 (-) True G1516056
XM_036951772.1 mRNA downstream 9721 10149011 ~ 10158506 (-) False LOC110495586
XM_036951770.1 mRNA downstream 9722 10149011 ~ 10158505 (-) False LOC110495586
XM_036951771.1 mRNA downstream 9722 10149011 ~ 10158505 (-) False LOC110495586
XR_005037367.1 mRNA downstream 21382 10138344 ~ 10146845 (-) True LOC110497041
XM_036951769.1 mRNA downstream 21389 10138344 ~ 10146838 (-) False LOC110497041
XM_036951774.1 mRNA upstream 6759 10175491 ~ 10229881 (-) False LOC110516308
XM_036951776.1 mRNA upstream 206039 10374771 ~ 10387072 (-) False LOC110527275
XM_036951777.1 mRNA upstream 206039 10374771 ~ 10387073 (-) True LOC110527275
XR_005037370.1 mRNA upstream 1020060 11188792 ~ 11194773 (-) False LOC118941093
XM_036951794.1 mRNA upstream 1027365 11196097 ~ 11204430 (-) True LOC110495606
TU1735073 other downstream 403002 9761473 ~ 9765225 (-) True G1515880
TU1734564 other downstream 674345 9488570 ~ 9493882 (-) True LOC110495556
TU1734538 other downstream 689009 9478676 ~ 9479218 (-) True G1515456
TU1734435 other downstream 744646 9422569 ~ 9423581 (-) True LOC110495568
TU1734456 other downstream 774619 9392696 ~ 9393608 (-) True LOC118941087
TU1735278 other upstream 6127 10174859 ~ 10195515 (-) True LOC110516308
TU1735300 other upstream 41586 10210318 ~ 10210833 (-) True G1516062
TU1735349 other upstream 90093 10258825 ~ 10259992 (-) False G1516107
TU1735899 other upstream 684837 10853569 ~ 10856314 (-) True G1516562
TU1736140 other upstream 879673 11048405 ~ 11048928 (-) True G1516757

Expression Profile