RNA id: TU1735315


Basic Information

Item Value
RNA id TU1735315
length 227
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1516076
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10233390 ~ 10233616 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actcttaaagtttattcaagtgcagtcgcacaaaccatcaagcgctatgatgaaactggctctcatgaggaccaccacaggaaaggaagacccagagttacctctgctgcagaaaataagttcattagagttatcagcctcagaaattacagcccaaatacagtcgggcaaaaaagtatttagtcagccaccaattgtgaaagttctcccacttaaaaagattagag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735309 lncRNA downstream 9035 10224138 ~ 10224355 (-) True G1516070
TU1735306 lncRNA downstream 14468 10218722 ~ 10218922 (-) True G1516068
TU1735297 lncRNA downstream 25608 10207390 ~ 10207782 (-) True G1516059
TU1735296 lncRNA downstream 26239 10206950 ~ 10207151 (-) True G1516058
TU1735295 lncRNA downstream 26892 10206281 ~ 10206498 (-) True G1516057
TU1735319 lncRNA upstream 4794 10238410 ~ 10239421 (-) True G1516080
TU1735335 lncRNA upstream 18678 10252294 ~ 10252595 (-) True G1516096
TU1735348 lncRNA upstream 26264 10259880 ~ 10260556 (-) True G1516107
TU1735358 lncRNA upstream 40500 10274116 ~ 10274351 (-) True G1516116
TU1735359 lncRNA upstream 42969 10276585 ~ 10276791 (-) True G1516117
XM_036951774.1 mRNA downstream 3509 10175491 ~ 10229881 (-) False LOC110516308
XM_036951772.1 mRNA downstream 74884 10149011 ~ 10158506 (-) False LOC110495586
XM_036951770.1 mRNA downstream 74885 10149011 ~ 10158505 (-) False LOC110495586
XM_036951771.1 mRNA downstream 74885 10149011 ~ 10158505 (-) False LOC110495586
XR_005037367.1 mRNA downstream 86545 10138344 ~ 10146845 (-) True LOC110497041
XM_036951776.1 mRNA upstream 141155 10374771 ~ 10387072 (-) False LOC110527275
XM_036951777.1 mRNA upstream 141155 10374771 ~ 10387073 (-) True LOC110527275
XR_005037370.1 mRNA upstream 955176 11188792 ~ 11194773 (-) False LOC118941093
XM_036951794.1 mRNA upstream 962481 11196097 ~ 11204430 (-) True LOC110495606
XM_036951408.1 mRNA upstream 977703 11211319 ~ 11212299 (-) True LOC110527288
TU1735300 other downstream 22557 10210318 ~ 10210833 (-) True G1516062
TU1735278 other downstream 37875 10174859 ~ 10195515 (-) True LOC110516308
TU1735073 other downstream 468165 9761473 ~ 9765225 (-) True G1515880
TU1734564 other downstream 739508 9488570 ~ 9493882 (-) True LOC110495556
TU1734538 other downstream 754172 9478676 ~ 9479218 (-) True G1515456
TU1735349 other upstream 25209 10258825 ~ 10259992 (-) False G1516107
TU1735899 other upstream 619953 10853569 ~ 10856314 (-) True G1516562
TU1736140 other upstream 814789 11048405 ~ 11048928 (-) True G1516757
TU1736155 other upstream 855613 11089229 ~ 11092444 (-) True G1516771
TU1736174 other upstream 934005 11167621 ~ 11174483 (-) False G1516784

Expression Profile