RNA id: TU1735463


Basic Information

Item Value
RNA id TU1735463
length 224
lncRNA type intronic
GC content 0.41
exon number 1
gene id G1516198
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10441446 ~ 10441669 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctctctcactctctctctctctctctatgtgctaACCTTCTTACTAATCATAAATCTAAGAATCTTAAATAATTACGGAACAACTTGATATGACACATTAGGTGCAGAAGGTGGTGTAGGTATCTGGTggagagtttgagagagagactggggttcAGCGACGGTGTGTACCAATGTTTTGCCAATTAGACAGACTTTGCCGTAGAAATGAAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735462 lncRNA upstream 139 10441107 ~ 10441307 (+) True G1516197
TU1735452 lncRNA upstream 16308 10424810 ~ 10425138 (+) True G1516187
TU1735446 lncRNA upstream 21636 10419457 ~ 10419810 (+) True G1516181
TU1735444 lncRNA upstream 26253 10414757 ~ 10415193 (+) True G1516179
TU1735443 lncRNA upstream 26729 10414441 ~ 10414717 (+) True G1516178
TU1735467 lncRNA downstream 3398 10445067 ~ 10445268 (+) True G1516202
TU1735471 lncRNA downstream 7914 10449583 ~ 10449785 (+) True G1516206
TU1735472 lncRNA downstream 9360 10451029 ~ 10451323 (+) True G1516207
TU1735474 lncRNA downstream 13948 10455617 ~ 10456361 (+) False G1516209
TU1735475 lncRNA downstream 14461 10456130 ~ 10456361 (+) True G1516209
XM_036951775.1 mRNA upstream 72868 10362570 ~ 10368578 (+) True LOC118941089
XM_036951773.1 mRNA upstream 292317 10146949 ~ 10149129 (+) True LOC118941088
XM_036951768.1 mRNA upstream 307318 10131530 ~ 10134128 (+) True LOC110495585
XM_036951407.1 mRNA upstream 319636 10118660 ~ 10121810 (+) True LOC118941061
XM_036951759.1 mRNA upstream 548211 9887375 ~ 9893235 (+) True LOC110495584
XR_005037368.1 mRNA downstream 414700 10856369 ~ 10862119 (+) False LOC118941090
XM_036951779.1 mRNA downstream 502734 10944403 ~ 10956829 (+) False LOC110527277
XM_036951780.1 mRNA downstream 502868 10944537 ~ 10956829 (+) True LOC110527277
XM_036951781.1 mRNA downstream 519075 10960744 ~ 10967479 (+) False LOC118936256
XM_036951782.1 mRNA downstream 519402 10961071 ~ 10967470 (+) True LOC118936256
TU1735389 other upstream 114308 10319310 ~ 10327138 (+) True G1516136
TU1735043 other upstream 269490 10170102 ~ 10171956 (+) True G1515853
TU1734946 other upstream 466140 9974528 ~ 9975306 (+) True G1515776
TU1733898 other upstream 1438320 9000398 ~ 9003126 (+) True G1515005
TU1732757 other upstream 1761236 8678448 ~ 8680210 (+) True LOC110495395
TU1735992 other downstream 575096 11016765 ~ 11017089 (+) True G1516637
TU1735957 other downstream 644416 11086085 ~ 11092554 (+) True LOC118941092
TU1736485 other downstream 1191398 11633067 ~ 11634979 (+) True G1517015
TU1736489 other downstream 1201120 11642789 ~ 11643758 (+) True G1517019
TU1736637 other downstream 1498393 11940062 ~ 11941105 (+) False G1517150

Expression Profile