RNA id: TCONS_00048203


Basic Information

Item Value
RNA id TCONS_00048203
length 2814
RNA type mRNA
GC content 0.32
exon number 4
gene id XLOC_024377
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 1266945 ~ 1323928 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGTCAAATGTTTGTTACTGgagacatttaaaaattaaaatgattgaaTACCACTCTGTTACTTGCGTTACACATTTACTATATGTTTTAATCCCGCCTCGAGACCAGTGAATGGGATTTGATGGAGATTTTGCTTTCTGTCGTCGAGCGCCATCTGCCGGAGTGAAAGTTCGCTTCATTACAAACACCTGACAGCACTTAGAGAAGGACTGAACACCAACATGGTCAGTTTGCCATCTCTTTCTATGTATTATtttcatgtaaaacaatatactaACTAATTAAATTGGCTTCTTATGTTCTTACAGGCGAAATTCCTCAGTCAAGATCAAATCAACGAGTATAAAGAGTGTTTTTCGCTGTATGACCAGAAGCGCAAGGGTAAACTGAAGGTGCAAGATCTGCTGACGGTCATGAGCTCTCTTGGTTGCTGTCCGACCCTGCCGGAGCTCCACAGACACTTGCTCTCCCATAAAATCGATAAGCACGGAGAGTTGGATTTCTCCACGTTTCTCAGCATCATGCATGAGCAGATCCAGCAGGAGAACCCGCGGGCCGAGATCCTGCAGGCCGTGAGGCTGACGGACACTGAGAAACGAGGATTTATCACTGCGGCAGAGCTCAGAGCCAGACTGACTCACTTTGGAGAAAAACTAAGAGATCAAGAAGTTGACGAGCTGCTGAGTGAAGCTGGTGTGGCAAATGACGGACAAATTAAATACGAGGACTGCGAAAGGATAGTGACTCTACTGACCAGGTGATGCTGAACAAACCTCAATAAATCAGTAGCAGAATGTCACTCCAGCTGAACATCACAGATATCACGGCCTCTAAATCTTCCCAAAACAGCAGAAAACGAAATAACTACACAACCCACCATATTTAACTGATAAACCACCTGCCAGACGGCTTCAATCATTAACCAACCTCCGTGGGATTGTTTTCAAAGTGCCAGATGTGTCTGTGTGACTTTCCTTAAAATAGTTTTCTGACCATCCAGAAGCTTTAAAGTGTCACTTAATATACTGTCTAAAATGATTAGTCGACTTCACTTAACAAAATGTGGtcaaacccattgcttttaaagcagaTTGATTGACTTTATTGTAAAATAGTGAATGAAACTCATTACTttcaaagcgattagttgactttactttaaagttGTCAATAAACCCCAatgcttttaaaacgattagttgattttatttttaaataatgaattaaaccCATTACTTTCAAAGGgattagttgattttattttaaaataattaattaaacccATTACTTTCAAAGGgattagttgattttattttaaaataatgaataaaacccATTACTTTTAAAGGGATTagtggattttatttttaaataatgatttaaacCCATTACTTTCAAAGGgattagttgattttattttaaaataattaattaaacccATTACttttaaagggattagttgattttattttaaaataatgaataaaacccATTACTTTTAAAGGGATTagtggattttatttttaaataacgaTTTAAACCCATTACTTTCAAAGGgattagttgattttattttaaaataattaattaaacccATTACTTTTAAAGGGATTagtggattttatttttaaataatgatttaaacCCATTACTTTCAAAGGgattagttgattttattttaaaataatgaattaaaccCATTACTTTCAAAGGgattagttgattttattttaaaataatgatttaaaccCATTACTTTCAAAGGgattagttgattttattttaaaataatgaattaaaccCAATGCTTTTAATGCGGTTGGTTGACTTTATTTAAGTAGTCAAGTAGTCAATAAAACCCAAcacttttaaagcgattaattgTGTTTACTTtaaaagcattgtttttttttttgtcaatgatACCCCTAAATCCTTCACTGACTTAAGGCAAGAGTTCAAGATACCAAGaggacatttttataaatatctgcAATTTCGCCATTTGATATTTAGTCATGAAAAGAGAggttatttctttattattattttatttttatttatttaattattgatttttttctctttgccttTTGCTACATTTGATACATTTGTCTTTGCCCTTGTTTGTTTACGTTTGTATGttcattaaaatcaataaaatataaaaaagcattGGGTTTTATTGGCTAATTTAAAGtttttagttgactttacattaaaatagtgaataaaaaacattacttttaaagcaattagtttactttaaaataataaataaaaccctttttttttttttttgaccgattagttgacttcacatcaggggcgttgctagggtcaaaaggaataaggggcttagccccaaagtaCCCACCAGCGGTTGAATGAAAGTAGtggttgaatgaaaataagatctgaataaacataaaaagggtttaactgattatttacacgactgtgacaataaatgttttaaagtcagaattattcacccccctttgaattttattttattttttaaatatttccaaaattatgtgtAATAGAGCAagtaaatgttcacagtatgtctgataatgttttttcttctggggaaagtctttgttgttttgctttggctagaataaaagcagttttttaaaattttttaaaaaccatttaagagtcaatattattatctcctttaagctatatattttttccgatagtctacagaacaaaccatcattatacaatgacttgcctaattaaccttcctttaaagcctttaaatgtcactttaagctgtatagaagtgtcttttaaaaatg

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0005509 calcium ion binding molecular_function
GO:0030234 enzyme regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071009-6 Predicted to enable calcium ion binding activity and enzyme regulator activity. Orthologous to human CALML4 (calmodulin like 4).

Ensembl:

ensembl_id ENSDART00000189175

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049301 lncRNA downstream 2476 1276283 ~ 1308073 (-) False XLOC_024377
TCONS_00049071 lncRNA downstream 4522 1305778 ~ 1306027 (-) False XLOC_024377
TCONS_00048198 lncRNA downstream 114437 1195282 ~ 1196112 (-) True XLOC_024375
TCONS_00049300 lncRNA downstream 667443 630933 ~ 643106 (-) True XLOC_024369
TCONS_00049299 lncRNA downstream 854071 455319 ~ 456478 (-) True XLOC_024366
TCONS_00048211 lncRNA upstream 140451 1464379 ~ 1471185 (-) True XLOC_024380
TCONS_00049302 lncRNA upstream 300952 1624880 ~ 1625878 (-) False XLOC_024381
TCONS_00049303 lncRNA upstream 300952 1624880 ~ 1625889 (-) False XLOC_024381
TCONS_00049304 lncRNA upstream 300952 1624880 ~ 1625896 (-) False XLOC_024381
TCONS_00049305 lncRNA upstream 300952 1624880 ~ 1625918 (-) True XLOC_024381
TCONS_00048199 mRNA downstream 75092 1220279 ~ 1235457 (-) True XLOC_024376
TCONS_00048197 mRNA downstream 184238 1088886 ~ 1126311 (-) True XLOC_024374
TCONS_00048196 mRNA downstream 185698 1088693 ~ 1124851 (-) False XLOC_024374
TCONS_00048195 mRNA downstream 231132 1047627 ~ 1079417 (-) True XLOC_024373
TCONS_00048194 mRNA downstream 312655 867146 ~ 997894 (-) True XLOC_024372
TCONS_00048205 mRNA upstream 2018 1325946 ~ 1334504 (-) False XLOC_024378
TCONS_00048207 mRNA upstream 2241 1326169 ~ 1333676 (-) False XLOC_024378
TCONS_00048206 mRNA upstream 2241 1326169 ~ 1333676 (-) True XLOC_024378
TCONS_00048208 mRNA upstream 19233 1343161 ~ 1426876 (-) False XLOC_024379
TCONS_00048209 mRNA upstream 19549 1343477 ~ 1348370 (-) False XLOC_024379
TCONS_00048188 other downstream 819764 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048212 other upstream 305727 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048237 other upstream 1692242 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048288 other upstream 3001688 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 3566839 4890767 ~ 4904432 (-) True XLOC_024434
TCONS_00048299 other upstream 4017034 5340962 ~ 5341102 (-) True XLOC_024438

Expression Profile

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