RNA id: TU1735750


Basic Information

Item Value
RNA id TU1735750
length 230
lncRNA type intronic
GC content 0.26
exon number 1
gene id G1516426
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10689395 ~ 10689624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacatcaattacactacacATATctttatacacatcaattacactatacacatctttatacacatcaattacactatacacatctttatacacatcaattacactatacatatctatatacacatcaattacactacacATATctttatacacatcaattacactatacatatctcaatacacatcaattacactatacatatctttatacacatcaattacactatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735743 lncRNA upstream 4896 10684214 ~ 10684499 (+) True G1516419
TU1735740 lncRNA upstream 7709 10681409 ~ 10681686 (+) True G1516416
TU1735735 lncRNA upstream 10850 10678277 ~ 10678545 (+) True G1516411
TU1735725 lncRNA upstream 19160 10669992 ~ 10670235 (+) True G1516401
TU1735721 lncRNA upstream 26904 10662289 ~ 10662491 (+) True G1516397
TU1735754 lncRNA downstream 3250 10692874 ~ 10693099 (+) True G1516430
TU1735755 lncRNA downstream 3480 10693104 ~ 10693325 (+) True G1516431
TU1735756 lncRNA downstream 4346 10693970 ~ 10694362 (+) True G1516432
TU1735757 lncRNA downstream 4887 10694511 ~ 10695315 (+) True G1516433
TU1735759 lncRNA downstream 5894 10695518 ~ 10695718 (+) True G1516435
XM_036951775.1 mRNA upstream 320817 10362570 ~ 10368578 (+) True LOC118941089
XM_036951773.1 mRNA upstream 540266 10146949 ~ 10149129 (+) True LOC118941088
XM_036951768.1 mRNA upstream 555267 10131530 ~ 10134128 (+) True LOC110495585
XM_036951407.1 mRNA upstream 567585 10118660 ~ 10121810 (+) True LOC118941061
XM_036951759.1 mRNA upstream 796160 9887375 ~ 9893235 (+) True LOC110495584
XR_005037368.1 mRNA downstream 166745 10856369 ~ 10862119 (+) False LOC118941090
XM_036951779.1 mRNA downstream 254779 10944403 ~ 10956829 (+) False LOC110527277
XM_036951780.1 mRNA downstream 254913 10944537 ~ 10956829 (+) True LOC110527277
XM_036951781.1 mRNA downstream 271120 10960744 ~ 10967479 (+) False LOC118936256
XM_036951782.1 mRNA downstream 271447 10961071 ~ 10967470 (+) True LOC118936256
TU1735389 other upstream 362257 10319310 ~ 10327138 (+) True G1516136
TU1735043 other upstream 517439 10170102 ~ 10171956 (+) True G1515853
TU1734946 other upstream 714089 9974528 ~ 9975306 (+) True G1515776
TU1733898 other upstream 1686269 9000398 ~ 9003126 (+) True G1515005
TU1732757 other upstream 2009185 8678448 ~ 8680210 (+) True LOC110495395
TU1735992 other downstream 327141 11016765 ~ 11017089 (+) True G1516637
TU1735957 other downstream 396461 11086085 ~ 11092554 (+) True LOC118941092
TU1736485 other downstream 943443 11633067 ~ 11634979 (+) True G1517015
TU1736489 other downstream 953165 11642789 ~ 11643758 (+) True G1517019
TU1736637 other downstream 1250438 11940062 ~ 11941105 (+) False G1517150

Expression Profile