RNA id: TU1735837


Basic Information

Item Value
RNA id TU1735837
length 323
lncRNA type intronic
GC content 0.30
exon number 1
gene id G1516502
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10836918 ~ 10837240 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactgtgacagacaaaatgagaaaaaaaattccagaaaatcacattgtaggattttttatgaatttatttgcaaattatacattatacattatgaaaattatacattatacatagcccacctataatttagcccaaacaactacctctttccctactgtatttcatttatttatttattttgctcctttgcaccaaattatttttatttctactttgcacattcttccattgcaaatctacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735834 lncRNA upstream 3845 10832544 ~ 10833073 (+) True G1516499
TU1735773 lncRNA upstream 50734 10710031 ~ 10786184 (+) True G1516446
TU1735769 lncRNA upstream 131657 10705018 ~ 10705261 (+) True G1516443
TU1735759 lncRNA upstream 141200 10695518 ~ 10695718 (+) True G1516435
TU1735757 lncRNA upstream 141603 10694511 ~ 10695315 (+) True G1516433
TU1735780 lncRNA downstream 22097 10859337 ~ 10859833 (+) False LOC118941090
TU1735775 lncRNA downstream 23897 10861137 ~ 10862069 (+) True LOC118941090
TU1735915 lncRNA downstream 30045 10867285 ~ 10867629 (+) True G1516567
TU1735917 lncRNA downstream 30776 10868016 ~ 10868225 (+) True G1516569
TU1735921 lncRNA downstream 40325 10877565 ~ 10877791 (+) True G1516573
XM_036951775.1 mRNA upstream 468340 10362570 ~ 10368578 (+) True LOC118941089
XM_036951773.1 mRNA upstream 687789 10146949 ~ 10149129 (+) True LOC118941088
XM_036951768.1 mRNA upstream 702790 10131530 ~ 10134128 (+) True LOC110495585
XM_036951407.1 mRNA upstream 715108 10118660 ~ 10121810 (+) True LOC118941061
XM_036951759.1 mRNA upstream 943683 9887375 ~ 9893235 (+) True LOC110495584
XR_005037368.1 mRNA downstream 19129 10856369 ~ 10862119 (+) False LOC118941090
XM_036951779.1 mRNA downstream 107163 10944403 ~ 10956829 (+) False LOC110527277
XM_036951780.1 mRNA downstream 107297 10944537 ~ 10956829 (+) True LOC110527277
XM_036951781.1 mRNA downstream 123504 10960744 ~ 10967479 (+) False LOC118936256
XM_036951782.1 mRNA downstream 123831 10961071 ~ 10967470 (+) True LOC118936256
TU1735389 other upstream 509780 10319310 ~ 10327138 (+) True G1516136
TU1735043 other upstream 664962 10170102 ~ 10171956 (+) True G1515853
TU1734946 other upstream 861612 9974528 ~ 9975306 (+) True G1515776
TU1733898 other upstream 1833792 9000398 ~ 9003126 (+) True G1515005
TU1732757 other upstream 2156708 8678448 ~ 8680210 (+) True LOC110495395
TU1735992 other downstream 179525 11016765 ~ 11017089 (+) True G1516637
TU1735957 other downstream 248845 11086085 ~ 11092554 (+) True LOC118941092
TU1736485 other downstream 795827 11633067 ~ 11634979 (+) True G1517015
TU1736489 other downstream 805549 11642789 ~ 11643758 (+) True G1517019
TU1736637 other downstream 1102822 11940062 ~ 11941105 (+) False G1517150

Expression Profile