RNA id: TU1735917


Basic Information

Item Value
RNA id TU1735917
length 210
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1516569
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10868016 ~ 10868225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttctttacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgtag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735915 lncRNA upstream 387 10867285 ~ 10867629 (+) True G1516567
TU1735775 lncRNA upstream 5947 10861137 ~ 10862069 (+) True LOC118941090
TU1735780 lncRNA upstream 8183 10859337 ~ 10859833 (+) False LOC118941090
TU1735837 lncRNA upstream 30776 10836918 ~ 10837240 (+) True G1516502
TU1735834 lncRNA upstream 34943 10832544 ~ 10833073 (+) True G1516499
TU1735921 lncRNA downstream 9340 10877565 ~ 10877791 (+) True G1516573
TU1735922 lncRNA downstream 18017 10886242 ~ 10886456 (+) True G1516574
TU1735941 lncRNA downstream 40050 10908275 ~ 10908498 (+) True G1516589
TU1735949 lncRNA downstream 55399 10923624 ~ 10925080 (+) True G1516596
TU1735950 lncRNA downstream 55854 10924079 ~ 10924953 (+) True G1516597
XR_005037368.1 mRNA upstream 5897 10856369 ~ 10862119 (+) False LOC118941090
XM_036951778.1 mRNA upstream 11686 10389628 ~ 10856330 (+) True LOC110510737
XM_036951775.1 mRNA upstream 499438 10362570 ~ 10368578 (+) True LOC118941089
XM_036951773.1 mRNA upstream 718887 10146949 ~ 10149129 (+) True LOC118941088
XM_036951768.1 mRNA upstream 733888 10131530 ~ 10134128 (+) True LOC110495585
XM_036951779.1 mRNA downstream 76178 10944403 ~ 10956829 (+) False LOC110527277
XM_036951780.1 mRNA downstream 76312 10944537 ~ 10956829 (+) True LOC110527277
XM_036951781.1 mRNA downstream 92519 10960744 ~ 10967479 (+) False LOC118936256
XM_036951782.1 mRNA downstream 92846 10961071 ~ 10967470 (+) True LOC118936256
XR_005037369.1 mRNA downstream 93560 10961785 ~ 10965666 (+) False LOC118941091
TU1735389 other upstream 540878 10319310 ~ 10327138 (+) True G1516136
TU1735043 other upstream 696060 10170102 ~ 10171956 (+) True G1515853
TU1734946 other upstream 892710 9974528 ~ 9975306 (+) True G1515776
TU1733898 other upstream 1864890 9000398 ~ 9003126 (+) True G1515005
TU1732757 other upstream 2187806 8678448 ~ 8680210 (+) True LOC110495395
TU1735992 other downstream 148540 11016765 ~ 11017089 (+) True G1516637
TU1735957 other downstream 217860 11086085 ~ 11092554 (+) True LOC118941092
TU1736485 other downstream 764842 11633067 ~ 11634979 (+) True G1517015
TU1736489 other downstream 774564 11642789 ~ 11643758 (+) True G1517019
TU1736637 other downstream 1071837 11940062 ~ 11941105 (+) False G1517150

Expression Profile