RNA id: TU1736095


Basic Information

Item Value
RNA id TU1736095
length 6362
lncRNA type read_through
GC content 0.46
exon number 4
gene id G1516727
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10959318 ~ 10967535 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTAAAATAGTACATCGTCACAAGCTCAAAGAAGAAGACCAACAATCAAGCCAGGTGGGGGATGTacttttggaaaagtttattctgaaacgacagagtgaaaataaataTAACTGATGGGGGAGGGGCTTGGCGGCCGATCCACAATCTTTTCCAGCCAGCATTGCCGGCAAGATGATGACATGAGGTGGGCGGGGCAGAGGGTACAATCCCCTACTTGATGAGTGGTCACCGTCCCACCCCAAGAGGAGAAACATGCCCCAGGTGGAGGCGAGGCTCGTCATCTGACAGCGGAGAGGTCACTTCCGTAGAGAGGAGTAGTGATGAGTTGAAAAGGGGACGGACGAaaacagaacaaacacagaaTGGCTTTTCGACATCCCATTATAGTCCTTTTCTTTCCTAGGTTGGTCTTTAGAAAAACAGTCCTGACACCATGGGGTCTGGGAGATGGATAAGCTTTGGTTGCTGCAGCACTATCTTACACAGACAGGACGTGCTTGACGAATGCTgtggggagaacagagagaacgcATAAGTACAGGAGCAAGAGacctaaataaaaaaaatcataaaacatACACATTTATAAAATCATTTCATAAACATCAATTTAAATAAGAGTACAAATATTTGAATGATAGTGTTATTAAAACAGCCTGTGACGTGATCTGTGCAGGATCCTGGGTATTTGCTCTTTAGAGGTTGAACAAGACTTGCCCTCATAGTTGATGCTGCCGTTCTCGTCCTCCTGACCTATAAGGAGGGAATCAATCTCGGCCTCTGACATCTTCTCCAGTGTGCCCAGCACGATGCGCAGCTCAGCCCCAGACACGGTGCCGTTGCCCTCCTTGTCGAAGACGCGGAGACCCTCAACGTAGTCATCAAGTGTACCCTTCACTATTTTATCGACTTTTTCCATCATGGGCATGAAATCGGCGAAGGCCAGCCTCTTGTTGGCCATATCTGACACGACGAAGGAGAAGAGATTGACGTTAGTCACACACGGAGTAGTGGTGGTCTCACCATCGGGGGATGGTTTTCCCAGGATCGCTGCAACCTCCTTGTTCTGGGGGTTCTGTCCCAGGGCGCGCATGACATCAGCCACCTGGTTGTATCCAATCATGCTGTCACCGACTCTGTCGAAGAGCCCAAAGGCCTCTTTGAAGTCTGGAGGGCGGAGGGAAGAGCAGAAGAGTTACGATGAGTTGGATGAAGACAAGCGGAAAGTACACAAACATACAGTAAGTAACCTGACAACTCTTCACACTCAAAATGTTTCAATAAATCAAAGTTGTAATATTTTAGTTATTGAAAGGGACGAAAAGGAGCTTCGTCGTTATTAGTCATTTTGTTTTGTGAACCAATGACAAAACAGACCAGGTATTTGTTCAATACTTCTAGTAAAACTACACGCAATCAATGACACTGTTCTCGTGAAAGTTCATTCTAAATGCAGCACTGGAGAATGGTGAGAAACGACATGTCTCATGTTGCCGTGCTGCAGATTCCAAGATGGCGACCGCTCGATTCCTCCCTCATTGTTCCCTGAATAATGATCAACTGTAGAGGTGAGGTAGCATGGCAGGCGGGTCCCTATTTCTATGGACTCCACTGTGAATCTCAATTGAAAGTGATCCAACAGATTACTGGCCTTATGTGATTTCTGAACTGCAGCAGCtgcccccctccctcactcccccctacAAGGCCTGCTGGCGTTTGGCATTTAGGACCAGCGACTGACAATCGATACGCCCTAAGAAAGTAACCCATGCCATATACGGGCACGGGCGTGTCCGCCTGCCCGGCTCGGTTTAAACATAAGAATGCTGACTCTGGAGTAATCAACACACGCTAGCATAGGGCCCGCCTGCATTCCTCCAGCACCCAGCCTAGCTGCTCCTCCAGCACCCAGCCTAGCTGCTCCTCCAGCACCCAGCCTAGCTGCTCCTCCAGCACCCAGCCTAGCTGCTCCTCCAGCACCCAGCCTAGCTGCTCCTCCAGCACCCAGCCTAGCTGCTGCTCCTCCAGCACCCAGCCTAGCTGCTCCTCCAGCCAATAGCAATTTATCTAGTCTAGAGTATGCAGAAGCAGTGGATTCTTTAGGAAACAGTTTATAATAACTTGTATTACATTATAAATGTTTATAAATGTTTATAATgaaaaaacatttgtttattaATGCTTATTTATGAAAGTTGATCAAGTGTTACCAATTTGTTCTAATAGTGACTTGTCTGATAACACCTATACAATAATTGTATTGTATAAGATGACATACAGGAATTGTATATGGTCTTAAGAACAGTGTGTTAATGATGTGTCCAGTATAGGAGAGTGGGGCCCACCTGCAGCACCCAGCCTAGCTTCTCCTCCAGCCAATGGGGCCCGCCTGCCACTGACTGACGTGATACTTCACTAGGTGCTAAAATGAATAATTGGCCTCAACAGTTCATTTCCAGCTCACCCTTTTCTGACCAGTTACCTACCACTAGTtagttctacacacacacaccaactaccACTAGTTCTACACACCAACTGCCACtagttctacacacacacacacacacacacacacacacacaccagttccacacacacaccaactgccACTAGTTCTACACACCAACTGCCACTAGTTCTACACACCAACTGCCACTAGTTCTACACACCAACTGCCACTAGTTCTACACACCAACTGCCACTAGTTCTACACACCAACTGCTACTAGTTCTACACACCAACTGCTACTAGCTCTACACACCAACTGCTACTAGTTCTACACACCAACTATCTCTACACAAAACAACAGCCACTCTGAAGGAGTCTTTTAAAAGATCATGTCCTTCAGTGAGGAACAAAGGGTGGAGGGTGGGTCAGGCTCCTGCTGTACGGAGATGCGGCTGGCCACGCGAGCCCTAAGGACCACTGTGCTCTGTCATTCAAGACAAGACAGTGCTGCTCAGAATAGAAGCAGGGACACTAATCTCCTCTGGACAGCTGAACAAGCCCCTGGGTTATTCTGCACTTGTGTTGTCAAGGCCATGGGCTCCAAAACTAGTGGACACAACTTAGGTAATTTCCAGTGACTTATCACACTTTGTTAGGCCCTCACAGACGGGACCTCATGGTGCAGAAACCATGCAGATCATACAATTCTACGTTGAGAGGATAACTAAAGCTAGTCCACAGGGGAACGTATTCTGGGGGCAACTTGACTGAGTGTAATTTTGCCTATTGAACTTGGTGAGTGCTACTTTGTAAAACACAGGGGACAGGCTTTTTCACTGAGCTATCTGTAAAGACAAAGTCCTCACCTAGTCCACATAGTCCTCACCTCACCTAGTCCACAGAGTCCTCACCTAGTCCACAGAGTCCTCACCTCACCTAATCCACATAGTCCTCACCTAGTCCTACACAGTCCTCACCTCACCTAGTCCACATAGTCCTCACCTAGTCCACATAGTCCTCACCTAGTCCACATAGTCCTCACCTCACCTAGTCCACATAGTCCTCACCTCACCTAGTCCTACACAGAGTCCTCACCTCACCTAGTCCTACACAGAGTCCTCACCTCACCTAGTCCACACCTCACCTAGTCCTACACAGAGTCCTCACCTCACCTAGTCCTACACAGAGTCCTCACCTCACCTAGTCCTACACAGAGTCCTCACCTAGTCTTACACAGAGTCCTCACCTAGTCCTACACAGAGTCCTCACCTAGTCCTACACAGAGTCCTCACCTAGTCCTACACAGAGTCCTCACCTAGTCCTACACAGAGTCTTCACCTAGTCCTACACACAGTCCTCACCTAGTCTTACACAGTCCTCACCTAGAGAGTAGATAGACAGGACAAAGAGAGGGCCCTAAGAAACTCAACACACTTCACTTACCCTCGATCTGGTCAGCCGAAAAAGCGGAACCGGATGCCTCAGCGGGAGCAGCATCAGCCTATTAAAGATGCACACAGCACAAGACAAGGATGATTCCCTAGGACCTGATCTGGGACCTGTTATAACCAATCCATCACCACCATGCACCACGGGCGTCCTGCCATTCTCAAAGTACCAACACATCGCCAGCACCATGGTGATACAGAGACTAATCTCAAAGTGATGCAGGTGCTCAACAGAATAACATACAAGTACAGGTGTATAGAAGGTCTACATTCTAGATATAGAACAATAAATTAATTAGACACTAGGTGAGAAATTACAGTAGTCAGTGTGACGATGGCTAGATGAAATGCTTTCAATGGTACAAGTACGTAGAGCTGTACAGATTAGCATTAGGGATATATTCCAAGGTTTCTCTGTGGAGCCCAATGAGAAGCTCTACTCTAATACGTCCACCTTGGTTTCTTCCCCAAAAAATGGAGTATGACAGTGGTTTATTTTGTTAAAGAAAGGAACCACCCAAGTCTTGATATCCAATCTCTATACCAAATCACACAGATGCCCTCATGGTAGTTCTGTAGCAACGTCAGGCTTTTAGATAATCCAATAGCCCCAAAGCCACACAAATGTATAGGCACAAAAAAAAAGCATTCAGGCACTGGTAAATCCAAAAGTACACACCATTACGGAGATGAAGGAGTTGACACGGGGCAGAAAGAAATACTAAAGAAGCAGGAGTCCCGAGAGAGAGTGGTCCTGAACCATGCTCAATGTCCCTCTCTTATTTATGATCGGGTGGTGATGTCACGGGGCGGGTCAGATGCCACTTTGGAAGTTCTCTAACTTTCTTAGGGCAATACGGAAAGTGGAGCTGTGGTCCCCTCTTGGAGCGCTGGCAGGCCTTTAGAAGGACGGGGACAGGGCTATATTTAGTCGGCTAAGGAACTGATTCGAGACGCCTTGTCTCGGGTCAGCATTTCCAAACCCCTTTACAAGGGTCGCAAATGATTTTATTGGTTGACATTCTAGCCTGCAGTAGGTGAGTGATAGATGGGCACTGAAATGGGCTAGATTTGCGTGTTCCGGCGCGGATTTAAAAAAATGCGCCGAACCAACAGAACCTACAACTGCAGAAAGCTTCTCATGTGATTATTTTTAAACAGTGAGAGTCTTCCTCCTCTTATGGTTGTATAGGGGAGTAGTCAAAACACACAACGAAAAGCAGGGTCCTGTTGGGTCCGCAGCAACAGTACGTCATGAAGCACTACGTTTAACAGGATATTTGTTGGCCGTAATAAGCATAGTGCCCTACAAATCAAGTTAGCCTTTTCCTATTGACGCTGCACACCTATTTGCATTAGGCCATAAACAACTGACACGAATTCGGTGGTAGGCTAATAAGTAGATGTGCGTGGGTTAAAAAAAATCCCCTGGGAAGCCAAGCCAGAATTTTTTTttgccatattacaacctgtgttgtgacaattgtgttgtttgctctataacctgttagttcatatgtctTGACACCGTTATATTTAGGtctaaaggccgagacaataagtcGAATACATTAAACCACACCtctgtttcatcacaaaaccggagtgCAACTCTGTCCGgtggagtccacaaagcatattgaatAGTTAGTTACCTGACATACAGCATGGTCAAGAAAGTTAATGTTTCCCATATTTTCGGACTAATGATTTAGAACCAGGGACAGTTACTGAAAGTCGCAAAGACAACAGGAGCTGCCTTCCACTATTCCAGCATCACCTGTGCTTAGCATAAAACAGTGACAATAAAAGATACCACTAACAATTGTCCAATCAATGTAAGTTAaatatgtggctgtccatggttccgatgtgtgtgtttgttcgtgcaagtagaaaaaacatgttgactcaccctacttgtagaggtCAATGCCATCCTTCTCTCTTGCACGGTGACGAAACGGTCTATGattgtcatacagtacacgcttttatttgttgttgtcttaggctacctggctaaaacgCTTGCTCGCTAGaataacttcctttcatgggcaatgtTATCTAGTtaaacattagccttctacatctagctacatattgaaacTTCAATCTTCTTagtccaggggcacaatgtattttATGGTTGAATCAAAAGCACTGTAATAATCATTGGCCAGTGCAGAGAACTAAGTAAACCCACAAATCCAAATacccatctccatccatggcaAATTTAGGAAAGGGTCCATTTTAGCAAGATGGCCACCTTTTTATCAAGGCTGATTGGCTATTCATACCTTTCTTTTTATCAAGGTAGGCCAAATGATCACTGGCTTCCCTTGTATTCAATGCTACAGTTGGCAAAAGTAAAGGCTTGTTCTTGTTTTCATTATCCAGTTTGTGTGTTGCATGTTTTACCAATACATTATGACAGAGGTGGACGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736105 lncRNA downstream 2321 10944415 ~ 10956997 (-) True G1516728
TU1736090 lncRNA downstream 18603 10940153 ~ 10940715 (-) True G1516723
TU1736082 lncRNA downstream 41296 10917798 ~ 10918022 (-) True G1516715
TU1735929 lncRNA downstream 66656 10892425 ~ 10892662 (-) True G1516581
TU1735927 lncRNA downstream 69758 10888998 ~ 10889560 (-) True G1516579
TU1736115 lncRNA upstream 18787 10986322 ~ 10988096 (-) True G1516735
TU1736120 lncRNA upstream 33347 11000882 ~ 11001709 (-) True G1516738
TU1736123 lncRNA upstream 45395 11012930 ~ 11013144 (-) True G1516741
TU1736125 lncRNA upstream 46196 11013731 ~ 11014268 (-) True G1516742
TU1736126 lncRNA upstream 47312 11014847 ~ 11015114 (-) True G1516743
XM_036951777.1 mRNA downstream 572245 10374771 ~ 10387073 (-) True LOC110527275
XM_036951776.1 mRNA downstream 572246 10374771 ~ 10387072 (-) False LOC110527275
XM_036951774.1 mRNA downstream 729437 10175491 ~ 10229881 (-) False LOC110516308
XM_036951772.1 mRNA downstream 800812 10149011 ~ 10158506 (-) False LOC110495586
XM_036951771.1 mRNA downstream 800813 10149011 ~ 10158505 (-) False LOC110495586
XR_005037370.1 mRNA upstream 221257 11188792 ~ 11194773 (-) False LOC118941093
XM_036951794.1 mRNA upstream 228562 11196097 ~ 11204430 (-) True LOC110495606
XM_036951408.1 mRNA upstream 243784 11211319 ~ 11212299 (-) True LOC110527288
XM_036951819.1 mRNA upstream 251484 11219019 ~ 11271822 (-) False LOC110495607
XM_036951818.1 mRNA upstream 256962 11224497 ~ 11227809 (-) False LOC110495607
TU1735899 other downstream 103004 10853569 ~ 10856314 (-) True G1516562
TU1735349 other downstream 699326 10258825 ~ 10259992 (-) False G1516107
TU1735300 other downstream 748485 10210318 ~ 10210833 (-) True G1516062
TU1735278 other downstream 763803 10174859 ~ 10195515 (-) True LOC110516308
TU1735073 other downstream 1194093 9761473 ~ 9765225 (-) True G1515880
TU1736140 other upstream 80870 11048405 ~ 11048928 (-) True G1516757
TU1736155 other upstream 121694 11089229 ~ 11092444 (-) True G1516771
TU1736174 other upstream 200086 11167621 ~ 11174483 (-) False G1516784
TU1737190 other upstream 641501 11609036 ~ 11745913 (-) True LOC110528752
TU1737459 other upstream 971595 11939130 ~ 11945939 (-) False LOC110527304

Expression Profile