RNA id: TU1736253


Basic Information

Item Value
RNA id TU1736253
length 371
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1516829
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11212664 ~ 11213034 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCATAGTGACACGCCAGCCAAAGCGTAATAAATAACTTAATGTGCCAAGGGATAGTCAGTCTGCTTGTTTTACTTGTGCCCATCTACAAATAGTTgccctttgcaaggcattggaaaacctccctggtctttgtgattaaatactttttgcaATGCagtgcttgactgagggaccttacagacaatTGTATGATTGGTGTACAGAGAGTCTCTCAACTCAGATAAAACACTATTCCATGCAACTTACgttacttgttaagcaaatttacTCCTGAAAATATGAAGGCTAGcaataacaaagggattgaatacatGACTCAAGACAATTCAGCTCGTCATTATTAATTACATTTGTccctttctaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736241 lncRNA downstream 23386 11185131 ~ 11189278 (-) False LOC118941093
TU1736243 lncRNA downstream 23386 11185131 ~ 11189278 (-) True LOC118941093
TU1736171 lncRNA downstream 38181 11169749 ~ 11174483 (-) True G1516784
TU1736187 lncRNA downstream 75200 11135893 ~ 11137464 (-) True G1516797
TU1736152 lncRNA downstream 132054 11080396 ~ 11080610 (-) True G1516769
TU1736256 lncRNA upstream 4161 11217195 ~ 11217420 (-) True G1516832
TU1736257 lncRNA upstream 25901 11238935 ~ 11239597 (-) True G1516833
TU1736283 lncRNA upstream 90781 11303815 ~ 11304102 (-) True G1516857
TU1736324 lncRNA upstream 113185 11326219 ~ 11327380 (-) False G1516887
TU1736327 lncRNA upstream 113185 11326219 ~ 11327380 (-) True G1516887
XM_036951408.1 mRNA downstream 365 11211319 ~ 11212299 (-) True LOC110527288
XM_036951794.1 mRNA downstream 8234 11196097 ~ 11204430 (-) True LOC110495606
XR_005037370.1 mRNA downstream 17891 11188792 ~ 11194773 (-) False LOC118941093
XM_036951777.1 mRNA downstream 825591 10374771 ~ 10387073 (-) True LOC110527275
XM_036951776.1 mRNA downstream 825592 10374771 ~ 10387072 (-) False LOC110527275
XM_036951819.1 mRNA upstream 5985 11219019 ~ 11271822 (-) False LOC110495607
XM_036951818.1 mRNA upstream 11463 11224497 ~ 11227809 (-) False LOC110495607
XM_036951817.1 mRNA upstream 11463 11224497 ~ 11253994 (-) False LOC110495607
XM_036951798.1 mRNA upstream 11463 11224497 ~ 11253996 (-) False LOC110495607
XM_036951802.1 mRNA upstream 11463 11224497 ~ 11253996 (-) False LOC110495607
TU1736174 other downstream 38181 11167621 ~ 11174483 (-) False G1516784
TU1736155 other downstream 120220 11089229 ~ 11092444 (-) True G1516771
TU1736140 other downstream 163736 11048405 ~ 11048928 (-) True G1516757
TU1735899 other downstream 356350 10853569 ~ 10856314 (-) True G1516562
TU1735349 other downstream 952672 10258825 ~ 10259992 (-) False G1516107
TU1737190 other upstream 396002 11609036 ~ 11745913 (-) True LOC110528752
TU1737459 other upstream 726096 11939130 ~ 11945939 (-) False LOC110527304
TU1737456 other upstream 728340 11941374 ~ 11943081 (-) False LOC110527304
TU1737445 other upstream 731862 11944896 ~ 11972320 (-) False LOC110527304
TU1737466 other upstream 734531 11947565 ~ 11948345 (-) True G1517784

Expression Profile