RNA id: TCONS_00049305


Basic Information

Item Value
RNA id TCONS_00049305
length 971
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id XLOC_024381
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 1624880 ~ 1625918 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgaatagtaaATAAAGACAACATGCGTTGTGAACATATGCTTTTATTGTTTCGACAAATGTCTTTTAGTTGTGTGTTGATGGTTTTGTTTTACATTAGGAGAGCCTGATATGGTAAAACATCACCGTTATTAGAGAAACATTTCCAATGAGCTTCTATTAAAATCTGTTGGCCATTTCAACAAGCATTAATGGAGCTACATAAGCAGTTTATGAATCATTTTCGCAGTGAATGTGTGTGCACTTCCCAGAAAGCTCCTTTAGTAAGCATGTGATGCCCTTGCAGTGCCGTCCACCCACACAAACGACTGCGCTAAAGTGTGTTAGAGAGcaatccacacacatacacacacacagagagctgAATCTCCGGCCAAATTAGTCTTGTTTTGGTCACACTCAGGTTGTGCTGACCAGATGGCCACTCTCTTGGGGAGTGTGTATATGTGCACGTTTGcacattgtgtgtatgtgtgtgcatgcgaaAGCCTTTCCAAATGCTCACAGCGGGTTTGTGCTGTAGAAGAGGAAGGTGCCACTGTGAACATGATGTATCGCAAGTCAGACCTCACCAAACCTCCACACGGGAGCCCTGGAGAACAGATTGCAGGTAGGTGTTAATTCACGACGGTGCGTGCAGAAATCAAAGGGAACGCTCGCCGTACATGACACTTCTCCACCGAACACATCATTTATTATTCCTTAAAAATGTATCATCATCCTAAAAATATTACCCAGATGAATGGAAGATCTGATTAAATTGGCAATAATCAGCATAATCATACCTatcgcaaatatatatatatatacagagcaCAGGAGAATCAAAACAATACTAGTCTTTCCATTTACAGACGAACAGGATGTACAAACAGGCAGaactgctttgatttttttttttttttaagggaatGCAAAAAGGAAAACCGCAAACTAAACATTCAGAGGATAAATTAATATCCTGAAAGGACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00048211 lncRNA downstream 153695 1464379 ~ 1471185 (-) True XLOC_024380
TCONS_00049301 lncRNA downstream 316807 1276283 ~ 1308073 (-) False XLOC_024377
TCONS_00049071 lncRNA downstream 318853 1305778 ~ 1306027 (-) False XLOC_024377
TCONS_00048198 lncRNA downstream 428768 1195282 ~ 1196112 (-) True XLOC_024375
TCONS_00049300 lncRNA downstream 981774 630933 ~ 643106 (-) True XLOC_024369
TCONS_00049306 lncRNA upstream 320450 1946368 ~ 1951444 (-) True XLOC_024385
TCONS_00048217 lncRNA upstream 347606 1973524 ~ 1974290 (-) True XLOC_024386
TCONS_00048220 lncRNA upstream 386759 2012677 ~ 2013391 (-) True XLOC_024388
TCONS_00048222 lncRNA upstream 500898 2126816 ~ 2131450 (-) False XLOC_024389
TCONS_00048221 lncRNA upstream 500898 2126816 ~ 2131461 (-) False XLOC_024389
TCONS_00048208 mRNA downstream 198004 1343161 ~ 1426876 (-) False XLOC_024379
TCONS_00048210 mRNA downstream 204021 1343867 ~ 1420859 (-) True XLOC_024379
TCONS_00048209 mRNA downstream 276510 1343477 ~ 1348370 (-) False XLOC_024379
TCONS_00048205 mRNA downstream 290376 1325946 ~ 1334504 (-) False XLOC_024378
TCONS_00048207 mRNA downstream 291204 1326169 ~ 1333676 (-) False XLOC_024378
TCONS_00048214 mRNA upstream 5910 1631828 ~ 1687481 (-) False XLOC_024383
TCONS_00048213 mRNA upstream 5910 1631828 ~ 1687481 (-) False XLOC_024383
TCONS_00048215 mRNA upstream 9292 1635210 ~ 1642395 (-) True XLOC_024383
TCONS_00048216 mRNA upstream 69629 1695547 ~ 1720736 (-) True XLOC_024384
TCONS_00048218 mRNA upstream 376797 2002715 ~ 2081371 (-) False XLOC_024387
TCONS_00048188 other downstream 1134095 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048212 other upstream 3737 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048237 other upstream 1390252 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048288 other upstream 2699698 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 3264849 4890767 ~ 4904432 (-) True XLOC_024434
TCONS_00048299 other upstream 3715044 5340962 ~ 5341102 (-) True XLOC_024438